PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000051.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 26967.1 Da PI: 8.0062 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Itr_sc000051.1_g00019.1 74 YTCTFCRREFRSAQALGGHMNVH 96 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.19E-6 | 71 | 101 | No hit | No description |
SMART | SM00355 | 0.0066 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.157 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-5 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAAQLGLFSV SHQLQNLVES QLQPPPPPSA GATTGYWMRN MKNAAAAAED EDSWEIRAFA 60 EDTGNNATWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHHAPPRP SVVPPHFPSP 120 AAAALFPPQE IVANASLCLL YSLPNPNAAA AFSPAAVKPC SVNSSPTLLS ISPFATTHNL 180 PSLNFPATTQ FIAASSLKVP AESSQAASNN NNNYSNNGTR KREAAIEEQL ELDLELRLGR 240 GSSSSSSSSP PP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 69 | 96 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 69 | 96 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019156059.1 | 1e-121 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1U8F631 | 3e-68 | A0A1U8F631_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3AFF7 | 3e-68 | A0A2G3AFF7_CAPAN; zinc finger protein JAGGED | ||||
STRING | POPTR_0003s09000.1 | 1e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-26 | C2H2 family protein |