PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000049.1_g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 25443.1 Da PI: 8.694 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.6 | 2.4e-34 | 9 | 102 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCa+Ck++r+kC+++Cvlap fpae+ ++f++vhk+FG+snv+k++++l+eeer +a++slv+eA +r++dPv G +g ++++ ++ Itr_sc000049.1_g00027.1 9 ACASCKHQRKKCTEKCVLAPFFPAEKGREFQAVHKVFGVSNVTKMVRNLKEEERGRAVESLVWEAICRQNDPVLGPFGEYRRVYEE 94 7************************************************************************************9 PP DUF260 87 leqlkael 94 l+ k++ Itr_sc000049.1_g00027.1 95 LKLYKSQY 102 99998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-33 | 9 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MQRSNGTTAC ASCKHQRKKC TEKCVLAPFF PAEKGREFQA VHKVFGVSNV TKMVRNLKEE 60 ERGRAVESLV WEAICRQNDP VLGPFGEYRR VYEELKLYKS QYEPTGMVIG WNNAAPAANN 120 NDGRTTTNNN NNIVHNNNDN NNNNNNSLNY IHSNGNNSVV GYNNYPINHP QNFEKLRRES 180 DNGSTVILPA RQHPINGFNQ QYFIAGQYNP ADTKSMESSL WDGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 10 | 86 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 10 | 86 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171921.1 | 1e-126 | PREDICTED: LOB domain-containing protein 2-like isoform X1 | ||||
TrEMBL | A0A1S4ARL9 | 5e-82 | A0A1S4ARL9_TOBAC; LOB domain-containing protein 2-like | ||||
STRING | XP_009619412.1 | 2e-82 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10177 | 18 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-45 | LOB domain-containing protein 2 |