PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000049.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 396aa MW: 44072.9 Da PI: 7.6365

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000049.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.4	6.8e-54	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL+ kv + +++ +i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat +gyWkat Itr_sc000049.1_g00003.1 21 LPPGFRFHPTDEELITFYLASKVFHGTFSG-IHITEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKAT 105 79***********************999.78***********8888899*************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ev+s+ +g+l g+kktLvfy+grap+gekt+Wvmheyrl Itr_sc000049.1_g00003.1 106 GKDREVYSAsSGALLGMKKTLVFYRGRAPRGEKTKWVMHEYRL 148 ***9978889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-63	18	170	IPR003441	NAC domain
PROSITE profile	PS51005	59.657	21	170	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	22	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MLGIEEILCE LNRDEDNEQG LPPGFRFHPT DEELITFYLA SKVFHGTFSG IHITEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL 120 GMKKTLVFYR GRAPRGEKTK WVMHEYRLDG HFSCRHTCKE EWVICRIYHK IGEKRNAIMV 180 QAAGGGQSYP TLKTLTSSAN VALPPFPEMQ SQNPMQHHHH HKSIVFHHQE NDLKSINHHH 240 PLLPQTNLLG LPSINGVLSS SFSAITSNKT TPTTSKANML DCNNTILLPS SSSSSSILFK 300 SQTGSSKSNA IATTAANCKI SPCHLSETEK YQNNPLFYGM GMGASPVTGF GFETMMPSAA 360 ATFDGMSTSP EGFTRTCSQM VDPPIQLTAD SWPMDL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MLGIEEILCE LNRDEDNEQG LPPGFRFHPT DEELITFYLA SKVFHGTFSG IHITEVDLNR  60
CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL  120
GMKKTLVFYR GRAPRGEKTK WVMHEYRLDG HFSCRHTCKE EWVICRIYHK IGEKRNAIMV  180
QAAGGGQSYP TLKTLTSSAN VALPPFPEMQ SQNPMQHHHH HKSIVFHHQE NDLKSINHHH  240
PLLPQTNLLG LPSINGVLSS SFSAITSNKT TPTTSKANML DCNNTILLPS SSSSSSILFK  300
SQTGSSKSNA IATTAANCKI SPCHLSETEK YQNNPLFYGM GMGASPVTGF GFETMMPSAA  360
ATFDGMSTSP EGFTRTCSQM VDPPIQLTAD SWPMDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-52	13	173	7	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172143.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9S851	1e-105	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	B9GPP5	1e-134	B9GPP5_POPTR; Uncharacterized protein
STRING	POPTR_0002s00730.1	1e-136	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-106	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]