PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000047.1_g00055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29336.8 Da PI: 8.9288 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.1 | 1.9e-45 | 5 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgk.rknratksgyWk 84 pGfrFhPt+eel+++yL+ v++kk + ++i ++iy+++PwdLp k+ ++ +e+ewyfF+ rd+k+ g+ ++nr+t +g+Wk Itr_sc000047.1_g00055.1 5 LPGFRFHPTEEELLNFYLRSAVNAKKPRS-DIIGFLNIYQHDPWDLPgKASEGqGEREWYFFVARDRKHGGGNgKANRTTGNGFWK 89 59************************888.99***************5433333677************975439999******** PP NAM 85 atgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+d+++ s+ ++++ g+kktLvfy+grap+g++tdWvm+e+rl Itr_sc000047.1_g00055.1 90 ATGSDRPIRSNspseGRKVLGMKKTLVFYQGRAPRGRRTDWVMNEFRL 137 *********9989888888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-51 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.707 | 4 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-24 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEVQLPGFRF HPTEEELLNF YLRSAVNAKK PRSDIIGFLN IYQHDPWDLP GKASEGQGER 60 EWYFFVARDR KHGGGNGKAN RTTGNGFWKA TGSDRPIRSN SPSEGRKVLG MKKTLVFYQG 120 RAPRGRRTDW VMNEFRLSDN TTCSLKEDVV LCKVYRKATS FKELEQKSLK EEQGYAVAAS 180 PTPASGGYGV HLKDFESTFF HVPTISSDQE SNHDKAQKFS ALYAKHGFVQ QEDALSEEVD 240 SLGNLFQVRD NWSLYAMY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-41 | 6 | 163 | 17 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172355.1 | 1e-149 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 1e-71 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A2Z5HVK7 | 0.0 | A0A2Z5HVK7_IPOBA; NAC5 protein | ||||
STRING | GLYMA11G10230.1 | 1e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3531 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-73 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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