PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000044.1_g00049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 30657.8 Da PI: 6.779 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.5 | 2.4e-44 | 5 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrF Pt+eelv++yL++k+eg++ +++ vi+ ++i+++ePw+Lpk + +e+++w+fF++r++++a+g r+ r+t++gy Itr_sc000044.1_g00049.1 5 TPGFRFYPTEEELVSFYLHNKLEGTRQDINCVIPMINIFDLEPWHLPKvsgelC-VGETEQWFFFVPRQEREARGGRPCRTTAAGY 89 69***************************888***************6456432.23677************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ v+s++++++g+kk++vfykg++p g+kt+W m+eyr+ Itr_sc000044.1_g00049.1 90 WKATGSPSYVYSSDNKVIGMKKSMVFYKGKSPCGRKTKWKMNEYRA 135 ********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-47 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.189 | 4 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-23 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MAEITPGFRF YPTEEELVSF YLHNKLEGTR QDINCVIPMI NIFDLEPWHL PKVSGELCVG 60 ETEQWFFFVP RQEREARGGR PCRTTAAGYW KATGSPSYVY SSDNKVIGMK KSMVFYKGKS 120 PCGRKTKWKM NEYRAIEEQL PSHLHPSYSS SLPFQKLRHE MTLCRVYVIL RNFGSFDRRP 180 IGNMANSSYR TSQEHGVNSQ EVKMIPMEAI KCSESAVVLQ GEEEEEDFDD GMNVYATTGL 240 TRMVKSPEPF SGLDRLINFQ LSNWNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-32 | 4 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-32 | 4 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-32 | 4 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-32 | 4 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 9e-32 | 4 | 167 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 8e-32 | 4 | 167 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 8e-32 | 4 | 167 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173689.1 | 1e-164 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 4e-77 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2Z5HVM6 | 1e-114 | A0A2Z5HVM6_IPOBA; NAC9 protein | ||||
STRING | PGSC0003DMT400067707 | 2e-96 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-78 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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