PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000040.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 325aa    MW: 34945.4 Da    PI: 6.5092
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000040.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.6e-18239272134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Itr_sc000040.1_g00005.1 239 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                              99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-731320IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.49233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.2E-15237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15237296No hitNo description
CDDcd002022.96E-14238285No hitNo description
PfamPF003202.2E-15239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDSNFVDEID CGSFFDHIDD LIDFPPENEC AGVGSGDCAN FPSIWDEPLP DSDPIFSAAH  60
SHSASDLSAE LSVPYEDIVQ LEWLSAFVEE SFSDGGLTLG KENYPIIPKP ESDKKFQAAS  120
SPISVLESST SSSSSSNSSC SGGSGGKVMP LSPSQRGAQR ARSKRPRPVA FNPRPVMQLI  180
ETPQPESFAD SPVKKVPRPP PAGAPEQKKK KKIKFSMPAL PNPGGPDQDQ TGAQPVRKCM  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPALH SNSHKKVVEM  300
RTKAVEQSPV SSLVAPTVTA PPEIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198448.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_019198449.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0V0HVM51e-135A0A0V0HVM5_SOLCH; GATA transcription factor
STRINGPGSC0003DMT4000599891e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-42GATA family protein