PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000034.1_g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 133aa MW: 14622.5 Da PI: 8.6667 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.6e-05 | 16 | 38 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Itr_sc000034.1_g00039.1 16 YSCSFCKREFRSAQALGGHMNVH 38 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.42E-7 | 13 | 42 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 14 | 40 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.6E-6 | 16 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 16 | 38 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 16 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 18 | 38 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MEDDDDKAAA WPPRSYSCSF CKREFRSAQA LGGHMNVHRR DRAKLKRSNN TMASSPPPIS 60 SSAIIFFQGN SAGDQKKGGC KRQRTAGGCG KTVSFMPVQV HSEDEEVEVV AGMRISRDSS 120 MEDIDLELRV GVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 8e-15 | 11 | 38 | 2 | 29 | superman protein |
2l1o_A | 8e-15 | 11 | 38 | 2 | 29 | Transcriptional regulator SUPERMAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191729.1 | 3e-66 | PREDICTED: uncharacterized protein LOC109186258 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 4e-22 | zinc-finger protein 10 |