PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000032.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 133aa MW: 14679.2 Da PI: 7.5996 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9.3e-18 | 21 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr...krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd + +r++lg+f +aeeAa+a+++a+ + +g+ Itr_sc000032.1_g00022.1 21 RYRGVRKRP-WGKYAAEIRDmT-----KpaaARVWLGTFNSAEEAARAYDRAAFATRGH 73 6********.**********55.....2334**********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.51 | 21 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 21 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 21 | 81 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-30 | 21 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-28 | 21 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.58E-26 | 21 | 81 | No hit | No description |
PRINTS | PR00367 | 3.0E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MADHNTGKTV DGGSGSGGEV RYRGVRKRPW GKYAAEIRDM TKPAAARVWL GTFNSAEEAA 60 RAYDRAAFAT RGHLAILNFP EEYNLPRSSS HFYSASATSS SSSREVIEFE CLDDKVLEDL 120 LDYDQNPGKK NRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-32 | 12 | 129 | 4 | 127 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180342.1 | 5e-59 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 5e-36 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2G9I9T0 | 7e-51 | A0A2G9I9T0_9LAMI; Uncharacterized protein | ||||
STRING | Solyc03g005500.1.1 | 7e-48 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 1e-25 | Ethylene-responsive element binding factor 14 |
Publications ? help Back to Top | |||
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