PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000032.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 20503.9 Da PI: 4.9539 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Itr_sc000032.1_g00012.1 33 YECAFCKRGFTNAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.19E-6 | 31 | 60 | No hit | No description |
PROSITE profile | PS50157 | 11.074 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MEVDKYTTNT SSDTSSEDSD HRPEDNVGVG RSYECAFCKR GFTNAQALGG HMNIHRKDKL 60 KAAKQNNISH HQQQQSPPRK PNYDQQYSDT RAGWATAQLS YQFNYSPPSN PSYQQVYYHH 120 TRMYGDFMGA NNDLSLRVGP SNVEDDEDEG RKEESDDDEE ETTDEVDLEL RLGRHKYR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163595.1 | 3e-73 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1U8GA01 | 1e-40 | A0A1U8GA01_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G2VTN8 | 1e-40 | A0A2G2VTN8_CAPBA; Putative transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A2G2YL98 | 1e-40 | A0A2G2YL98_CAPAN; transcriptional regulator TAC1 | ||||
STRING | XP_009613300.1 | 8e-36 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 2e-15 | C2H2 family protein |