PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000026.1_g00057.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 681aa    MW: 77239.8 Da    PI: 8.4524
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000026.1_g00057.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026246269123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y C  Cg++F +++ + +H +  H
  Itr_sc000026.1_g00057.1 246 YICRVCGRRFYTNEKFINHFKQiH 269
                              89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.6E-8225260IPR029060PIN domain-like
SuperFamilySSF576675.97E-5242272No hitNo description
PROSITE profilePS5015711.177246274IPR007087Zinc finger, C2H2
PROSITE patternPS000280248269IPR007087Zinc finger, C2H2
CDDcd061676.52E-16263398No hitNo description
PfamPF019362.3E-8318401IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10105.6E-8331400IPR029060PIN domain-like
SuperFamilySSF560471.03E-6503583IPR000630Ribosomal protein S8
Gene3DG3DSA:3.30.1370.308.1E-5543563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005739Cellular Componentmitochondrion
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MEMKTFISMA METKVLVSMA METKILVSMA GDDDLRLRPE NFPNFSVPLR VSAVSDSLQS  60
ALTGSPEPPL SAQPLAPSVL DQSTLSSQPQ SPLLPRQLLH QPLRLHQAPS PVRLSTVQTP  120
ASQQLKELVK MVLKELNARG VQKNLNMGLG SDGLGSSLDL AQKKAQSIVG IFWDLDNKPP  180
KTLPPFEAAS KLRKAAEQFG FVKYMIAYAN HHSFNYVPPV VRQQRKERKV LNELENKGVV  240
KPDEPYICRV CGRRFYTNEK FINHFKQIHE REQVKRLNQI ESAKGSRRVK LVAKYAMKMQ  300
KYKNAARDIL TPKVGYGLAD ELKRAGFWVR TVSNKPEAAD IALRDHLVDM MDKRRVDCVL  360
LISDDSDFVD VLKEAKLRCL RTVVIGDSND GALKRTADAS FSWQEITMEK AKKEAVSVVG  420
RWKDHDVLKT LEWTYDPGRD KKYYVSDIES EGSDIEHFLS EGNDDNSLQK EDSGACFQDS  480
ETGTKHSPTW LEYSPLLSEL VTVLHNFCLR TNRALMEKEA SRRTETVSVY NNIRKELILL  540
LQTEFEFVDD HRAGKIVVEL HGRLNKCGVI SPRFDIGVKD IEGLTARVLD CSLQDSWHHG  600
PTMRRPEGRT LEEKYSVSFT RIVLSIRNII ELVSGDEQCQ RFLVALMINY HHDDIMTYLS  660
LSPGIFAGFF IAALCCWRDL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SH3e-195445894994Ribosomal protein S15
4v7e_BW3e-19544589499440S ribosomal protein S8
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151400.10.0PREDICTED: uncharacterized protein LOC109148085
STRINGXP_009631868.11e-172(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-143C2H2 family protein