PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000024.1_g00038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33180.1 Da PI: 5.1379 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.1e-19 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp +r +r++lg+f taeeAa ++ a+ +l+g Itr_sc000024.1_g00038.1 112 KFRGVRQRP-WGKWAAEIRDP----IRkTRIWLGTFNTAEEAAYVYDSAAIELRG 161 89*******.**********7....246*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 111 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-13 | 112 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-37 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 112 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 112 | 169 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.03E-32 | 112 | 168 | No hit | No description |
PRINTS | PR00367 | 1.7E-10 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDGNGNPVKY RVEKTVTLKQ FKGGLCHNMP KVVRISVTDD DATDSEDEGV FCGGFRRIMK 60 KHVSEVRLER GGFVEDRNEK GGNRFKKVKT GGKKMGQVVE DKQKCGNGSV RKFRGVRQRP 120 WGKWAAEIRD PIRKTRIWLG TFNTAEEAAY VYDSAAIELR GPDALTNFLA PPPRSAVSDY 180 DSTGESEVVP SPTSVLRTRT ATAAADAEKC NGNEDNQLGV EPPTTTENGT MNLLTSTDCC 240 LNGVLDFWSS SSLLTDYYHY GGDDKILPEV KMEGSLDDIS LDFGGDFQAC TWDVNDLLNG 300 AA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-20 | 111 | 168 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190997.1 | 1e-151 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A328E8E1 | 9e-70 | A0A328E8E1_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484M210 | 9e-70 | A0A484M210_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-41 | cytokinin response factor 4 |