PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 201aa    MW: 22277.2 Da    PI: 9.8761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1677128256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +ykGVr+++ +g+++AeIrdp   + + +r +lg++  +e+Aa a+++ + kl+g+
  Itr_sc000022.1_g00005.1  77 RYKGVRRRP-WGKFAAEIRDP---NrRGARLWLGTYERPEDAALAYDREAFKLRGA 128
                              7********.**********9...4334*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3277141IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2277136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2977136IPR001471AP2/ERF domain
CDDcd000181.64E-2677137No hitNo description
PROSITE profilePS5103223.44677135IPR001471AP2/ERF domain
PfamPF008474.9E-1177127IPR001471AP2/ERF domain
PRINTSPR003679.2E-127889IPR001471AP2/ERF domain
PRINTSPR003679.2E-12117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MESEFDFAFL DSLQQHLLDD SDFPAIFAEI DQCGNSSAVI GGDHDSAGGS PESWEVQKAS  60
GAAREECSPL PPRDWRRYKG VRRRPWGKFA AEIRDPNRRG ARLWLGTYER PEDAALAYDR  120
EAFKLRGARA LLNFPHLIGS NVPAPVRVKP RRRALPKASS PASLSTESGI GAPKRRKISI  180
INSLAAKVNL DRVSMFDMLT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2776140468ATERF1
3gcc_A3e-2776140468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188760.11e-119PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-37ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLM1DMP72e-53M1DMP7_SOLTU; Uncharacterized protein
STRINGSolyc01g090310.2.12e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-33ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]