PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000021.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 460aa    MW: 50736.7 Da    PI: 4.5137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000021.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.8e-132511619128
                      NAM  19 LkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                              L +kv++ +   ++v ++++ y++ P++Lp+      + wy   ++d+k+          ++g Wka+g+  ++++ +g+  g + 
  Itr_sc000021.1_g00002.1  25 LLEKVKNGSALPNNVSEDINPYQYLPSNLPA------EIWYLVQQTDSKK---------SEHGLWKAKGEACPIYQ-NGSIYGWRS 94 
                              5566666664444778888999999999982......3476666655543.........468**************.999****** PP

                      NAM 105 tLvfykgrapkgektdWvmheyrl 128
                              tL f+  + p+g+kt Wvm+ey+ 
  Itr_sc000021.1_g00002.1  95 TLEFF--EGPNGRKTGWVMQEYKT 116
                              *****..789999*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.9949145IPR003441NAC domain
SuperFamilySSF1019411.83E-1522125IPR003441NAC domain
PfamPF023652.2E-725115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MCPPATTPLD AIDDVYWTAE QIFLLLEKVK NGSALPNNVS EDINPYQYLP SNLPAEIWYL  60
VQQTDSKKSE HGLWKAKGEA CPIYQNGSIY GWRSTLEFFE GPNGRKTGWV MQEYKTEKEG  120
YNERSQKVFS HTILQSRSLC SVFHCSNDMP SEKKPAVASR GNAMNSMLLS APNANRTSGL  180
GSTSESQVRT ALLYSSSRFS VEAKSKDAGS TQSPPLETSK DVSFEHLLSS FLSDEGYIEM  240
DDLVEVPKLP AVDEAIDPRD EALINQILME DGLELDDLTG DIGPLPAANK AEDPRSEALS  300
DEILKEGFME LDDLEDPEDI AGDFLEMNDM DRVLSPSTSS VNTSHRTLAS EDDFFATLRN  360
MDDDNNGDPK GKGSSYNCRN MGPVKPDEVI IQLAPSGSLV KATGSKAAVE TRPTSSTNSN  420
IQIKPPLGGR GQITEKKVEK TLHRAATKNK FKKYLCFFPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174897.11e-152PREDICTED: NAC transcription factor ONAC010-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.19e-11NAC family protein