PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000019.1_g00069.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 413aa    MW: 47014.9 Da    PI: 7.1713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000019.1_g00069.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005779101323
                              ET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                              C+   Cgk+F +   L++H   H
  Itr_sc000019.1_g00069.1  79 CSyeGCGKTFIDAGALRKHSHIH 101
                              77779**************7766 PP
2zf-C2H214.88e-05106130123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y C+  +Cgk F ++s LkrH   H
  Itr_sc000019.1_g00069.1 106 YICHyeNCGKKFLDSSKLKRHFLIH 130
                              89*******************8877 PP
3zf-C2H221.18.1e-07136160123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              y Cp   Cgk Fs   nLk+H++tH
  Itr_sc000019.1_g00069.1 136 YMCPheGCGKAFSLDFNLKSHMKTH 160
                              89**********************9 PP
4zf-C2H215.54.9e-05166191123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              ++Cp   Cgk++ + + Lk+H  + H
  Itr_sc000019.1_g00069.1 166 HVCPypECGKRYAHEYKLKNHVASaH 191
                              79*******************99888 PP
5zf-C2H216.13.2e-05269294123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              y+Cp   C+k + + + L+ H+r+ H
  Itr_sc000019.1_g00069.1 269 YVCPyeGCDKAYIHEYKLNLHLRKeH 294
                              99**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-1374103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.22E-880130No hitNo description
Gene3DG3DSA:3.30.160.609.0E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.983106135IPR007087Zinc finger, C2H2
SMARTSM003550.013106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.94E-14117169No hitNo description
Gene3DG3DSA:3.30.160.605.8E-20127161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.8E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.902136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-7162188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054166191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933166191IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-9263292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.19E-5264292No hitNo description
SMARTSM003550.0021269294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783269299IPR007087Zinc finger, C2H2
PROSITE patternPS000280271294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEPPAFHNLF DRRPITKSKA PATKWFKEWV PQDVVATGGK CFLLKWVNEA TLKALKEKPE  60
EPEVPEPEPK PATDVLFLCS YEGCGKTFID AGALRKHSHI HGERQYICHY ENCGKKFLDS  120
SKLKRHFLIH TGERNYMCPH EGCGKAFSLD FNLKSHMKTH SQENYHVCPY PECGKRYAHE  180
YKLKNHVASA HQKVGITLQY HLLLGKGTLV PPDTTTYVFG VVPGVVRTKV DIKTTMPDAT  240
KYSQPVEKPN KTAKSSGAVH ASASSNRPYV CPYEGCDKAY IHEYKLNLHL RKEHPGHFPD  300
ESAKNAQPAA TENEMDEDVA QDTYPVKRKN TKTQKQTRPK PNLKPPPAKA RRLNAIDSPA  360
NLSAVNKPWP VKEEAYEEDE DSEETEEEKF NVGDQWRYRE NGDDEDEDTE LED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-33791898116PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173832.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-135YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A328D6K41e-177A0A328D6K4_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]