PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000019.1_g00068.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 491aa MW: 51059.8 Da PI: 6.307

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000019.1_g00068.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.4e-39	111	212	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ ++s + s+++ ++ Itr_sc000019.1_g00068.1 111 VKRPTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNVSLRGSGAALAAP 196 589****************************************************************9886555555555533333 PP TCP 89 ...............k 89 + Itr_sc000019.1_g00068.1 197 lsksaqypfhstlalA 212 3333334444333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.791	115	169	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.5E-35	115	215	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MELTNSQSNN IPNNSSPTSI ATAPQPFHRH QHGGARSSTA PFITSITAAA AAAAHQATHA 60 STLPSTSSAG ASTSSAAAAP PSRLVDASLA IATRSEAVVE ASEEPPPQQA VKRPTKDRHT 120 KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT GTGTIPANFS 180 TLNVSLRGSG AALAAPLSKS AQYPFHSTLA LATASAHPYE ESFSHMLGFH HQHAPPQLLT 240 PSQIAETISA AAAAGGGGGD GVGGETTTED YLRKRYREDL FKDEGASSNP QGEPSGNSTS 300 PSNKQFKGGA SAATAAAAGA FPTILRQTTA PMPATTMWAV APTPSSGGTL WMLPFAAAGG 360 GGESGQALHA AAESTSGDAP SETQMWPFSN HNSNQTLQSH LQFAPRFNLP ANLDFHGGRD 420 ALPPPSHHLG LGMSDGNLGV LAAFNNAYSR TRNGLNMNSD EQQQQQQQQQ HQAQDESDEE 480 DDDNDPNNSC T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MELTNSQSNN IPNNSSPTSI ATAPQPFHRH QHGGARSSTA PFITSITAAA AAAAHQATHA  60
STLPSTSSAG ASTSSAAAAP PSRLVDASLA IATRSEAVVE ASEEPPPQQA VKRPTKDRHT  120
KVDGRGRRIR MPAACAARVF QLTRELGHKS DGETIEWLLH QAEPAIIAAT GTGTIPANFS  180
TLNVSLRGSG AALAAPLSKS AQYPFHSTLA LATASAHPYE ESFSHMLGFH HQHAPPQLLT  240
PSQIAETISA AAAAGGGGGD GVGGETTTED YLRKRYREDL FKDEGASSNP QGEPSGNSTS  300
PSNKQFKGGA SAATAAAAGA FPTILRQTTA PMPATTMWAV APTPSSGGTL WMLPFAAAGG  360
GGESGQALHA AAESTSGDAP SETQMWPFSN HNSNQTLQSH LQFAPRFNLP ANLDFHGGRD  420
ALPPPSHHLG LGMSDGNLGV LAAFNNAYSR TRNGLNMNSD EQQQQQQQQQ HQAQDESDEE  480
DDDNDPNNSC T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173827.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A1U7XY29	1e-134	A0A1U7XY29_NICSY; transcription factor TCP8-like
STRING	XP_009795828.1	1e-135	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	4e-56	TCP family protein