PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000018.1_g00020.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 197aa MW: 22600.1 Da PI: 4.8285

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000018.1_g00020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.3	9e-38	9	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t++g+Wk Itr_sc000018.1_g00020.1 9 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGRKWYFYSRRTS--------RRMTENGFWKPL 85 79***********************999.99**********977778899**9854........789***** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +++++s+ g++vg+kk +fy g+ p+g ktdWvm+eyrl Itr_sc000018.1_g00020.1 86 GVEEPIFSSsgAGQKVGMKKYYAFYVGEPPEGDKTDWVMQEYRL 129 ****9888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-47	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	46.279	9	163	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	10	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK AALLPCHPDV IPDLDLYPYD PWDLDGKAMA 60 EGRKWYFYSR RTSRRMTENG FWKPLGVEEP IFSSSGAGQK VGMKKYYAFY VGEPPEGDKT 120 DWVMQEYRLS DYSASTSSRS SSRRNRHSKI DYSKWVICRV FEGNYDNGGG GDDGTELSCL 180 DEVFLSLDDL DEISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-39	5	162	13	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-39	5	162	13	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-39	5	162	13	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-39	5	162	13	164	NO APICAL MERISTEM PROTEIN
4dul_A	1e-39	5	162	13	164	NAC domain-containing protein 19
4dul_B	1e-39	5	162	13	164	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169764.1	1e-113	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-81	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A482EPT4	1e-145	A0A482EPT4_IPOBA; NAC15
STRING	XP_009762857.1	3e-99	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-65	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]