PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000017.1_g00042.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 240aa MW: 26121.8 Da PI: 7.4994

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000017.1_g00042.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.3	9.6e-25	43	98	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kprl+WtpeLH rF ea++ LGG ++AtPk+ilelm+ Ltl++v H Q YR++ Itr_sc000017.1_g00042.1 43 KPRLKWTPELHGRFCEAIQFLGGVQRATPKAILELMNGTNLTLKQVTNHFQIYRSH 98 79****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.9E-22	41	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.99E-14	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-20	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	45	95	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MAENSFPSSS FSSASASNPS LLGTLPPSSS ADQISTMSDI QPKPRLKWTP ELHGRFCEAI 60 QFLGGVQRAT PKAILELMNG TNLTLKQVTN HFQIYRSHCF DLEQLARETQ AAVAQMAWVP 120 PPLPYLYGYP APFYSAPPPA LYSPFPPQPP QQLPPPPPPA RLYIDPVGPM PPTVPPSMRV 180 MDYSAPAPKT IIFKKLFPKG RPIDAEEDIN PGPSSSAARN EGQDDGPLDL TLSIRPPNRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019171617.1	8e-65	PREDICTED: transcription activator GLK2-like isoform X3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12062	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	3e-17	G2-like family protein