PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000016.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 730aa MW: 79457.9 Da PI: 6.4087

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000016.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	301	321	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Itr_sc000016.1_g00018.1 301 PCPDFRK-GACRRGDMCEYAHG 321 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.8E-17	31	159	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.5E-18	34	165	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.3E-10	67	150	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.62E-14	80	159	No hit	No description
SMART	SM00248	0.01	81	111	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	15.114	81	156	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0012	116	148	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	116	151	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	296	322	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-4	300	323	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	301	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-5	301	321	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	42	331	354	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MSGGLEQSKY NLSTNWSNSD NMKDMSKLSV ETDDSFSSLL ELAANNDLDA FKRSVERDGS 60 AVDEVGIWLV RKKGAKQIVK EERSPLMVAA MYGSIDVLKF LISLPEVDVN RACGPDKCTA 120 LHCATSGGSV HAAEVVKLLL SAGADPNIED ANGQRPADVI VVPPKFPGAR ASLEELLLNN 180 ISDGSVGECN LRVHVTTSNG SSPDLSSSPC SPSESASYPL TSKFGDVPAN SVQEKKEYSI 240 DPSLPDIKNS IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV 300 PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKEG TSCVRRVCFF AHMPEELRPL 360 YVSTGSAVPS PRSTAATATV MDMAAALSLL PGSPSSHSMM SPAFNQPMSP TANGMSHSSP 420 AWPQPNIPTL HLPGSNLQSS RLRSSLSVRD IPPEDLNMLR DFDAQQQLVL NDMACFSQPR 480 PGSASFSRSG CTNTLTPSNL DELFSAEIAS SPRYSDQAMA SAAFSPSHKS AILSQLQQQQ 540 SMLSPINTNM FSPKNADHPL LQASFGVSST GRMSPRSVEP ISPMSARLSV FAQREKQHQQ 600 LRSLSSRDLG SNNNTSIVGS PVSNSWSKWG SPSSRPDWSF NGDEPSHLRR SSSFERLNNN 660 NNSEEPDLSW VQSLVKESPP EMKDKSAAAP APGGAVPSGE GLKFSTQTDS IDQSVIGTWL 720 EQMQLDQPVV

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MSGGLEQSKY NLSTNWSNSD NMKDMSKLSV ETDDSFSSLL ELAANNDLDA FKRSVERDGS  60
AVDEVGIWLV RKKGAKQIVK EERSPLMVAA MYGSIDVLKF LISLPEVDVN RACGPDKCTA  120
LHCATSGGSV HAAEVVKLLL SAGADPNIED ANGQRPADVI VVPPKFPGAR ASLEELLLNN  180
ISDGSVGECN LRVHVTTSNG SSPDLSSSPC SPSESASYPL TSKFGDVPAN SVQEKKEYSI  240
DPSLPDIKNS IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV  300
PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKEG TSCVRRVCFF AHMPEELRPL  360
YVSTGSAVPS PRSTAATATV MDMAAALSLL PGSPSSHSMM SPAFNQPMSP TANGMSHSSP  420
AWPQPNIPTL HLPGSNLQSS RLRSSLSVRD IPPEDLNMLR DFDAQQQLVL NDMACFSQPR  480
PGSASFSRSG CTNTLTPSNL DELFSAEIAS SPRYSDQAMA SAAFSPSHKS AILSQLQQQQ  540
SMLSPINTNM FSPKNADHPL LQASFGVSST GRMSPRSVEP ISPMSARLSV FAQREKQHQQ  600
LRSLSSRDLG SNNNTSIVGS PVSNSWSKWG SPSSRPDWSF NGDEPSHLRR SSSFERLNNN  660
NNSEEPDLSW VQSLVKESPP EMKDKSAAAP APGGAVPSGE GLKFSTQTDS IDQSVIGTWL  720
EQMQLDQPVV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158894.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Refseq	XP_019158895.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U7Y918	0.0	A0A1U7Y918_NICSY; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009799603.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]