PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00095.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 579aa    MW: 63152.9 Da    PI: 5.1781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00095.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017e-32143200260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDgy+WrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++++ei+Y+g Hnh+k
  Itr_sc000011.1_g00095.1 143 DDGYTWRKYGQKHVKGSEYPRSYYKCTHPKCTMKKKVERSP-DGQITEIVYKGAHNHPK 200
                              8****************************************.***************85 PP
2WRKY107.18.7e-34357415159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d k v++tYeg+Hnhe
  Itr_sc000011.1_g00095.1 357 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASDDLKSVITTYEGKHNHE 415
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-28136200IPR003657WRKY domain
PROSITE profilePS5081122.653137201IPR003657WRKY domain
SuperFamilySSF1182901.44E-24141200IPR003657WRKY domain
SMARTSM007741.2E-34142200IPR003657WRKY domain
PfamPF031061.4E-24143199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36342417IPR003657WRKY domain
SuperFamilySSF1182904.58E-29351417IPR003657WRKY domain
PROSITE profilePS5081138.09352417IPR003657WRKY domain
SMARTSM007742.6E-39357416IPR003657WRKY domain
PfamPF031063.8E-26358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MQFPAAMEDE NFVFNLVIDD DNSPDEMKSS IGESSDPFPS TSANETHSSS PMQIIPFDFP  60
MESLDCGVDM SSAVDTNPNS NSNLMLQSPV NGECINNNVN GETCSRFNNP EPELDQRRSA  120
AAAPAAKSLA NNNNNNSAGS SSDDGYTWRK YGQKHVKGSE YPRSYYKCTH PKCTMKKKVE  180
RSPDGQITEI VYKGAHNHPK APATSLRRSP PSLGAESSSS EMMSQGSGSC FRSQAPIWAN  240
IHHYGSMPER SALASSSDLT AEICDPLSSL TTRSAAAMSG FESATTPEPS STLASQDCDD  300
NEDAVNQGIS PSQFGEDGES EPKRRRKDGW SIEANLSTRS IREPRVVLQI ESEIDILDDG  360
YRWRKYGQKV VKGNPNPRSY YKCTSPGCPV RKHVERASDD LKSVITTYEG KHNHEVPPNK  420
AAVVNYNSYS TASGTTASSA MPRAPALGGV GVQDHHPSFP FERKPMIAGA AGGDELLRPE  480
MLDCYAGGDF RFVPSSIYPL KFPPPPLQGP LTAAAATFNY SRPPGMVLPE FPMPLLPMSL  540
PPFHELTNLP PLADFLHFND PSTKEEHKEN DPHTSLLYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32143417877Probable WRKY transcription factor 4
2lex_A2e-32143417877Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193156.10.0PREDICTED: WRKY transcription factor WRKY24-like
TrEMBLA0A386IPT21e-116A0A386IPT2_ZIZJJ; WRKY transcription factor 55
TrEMBLA0A484MUN71e-118A0A484MUN7_9ASTE; Uncharacterized protein
STRINGXP_004304815.11e-114(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-78WRKY DNA-binding protein 2