PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000006.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 273aa    MW: 29454.1 Da    PI: 8.4966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000006.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00077110132123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  Itr_sc000006.1_g00027.1 110 YECKTCNRVFPSFQALGGHRASH 132
                              99**********99999998887 PP
2zf-C2H213.50.00022181203123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  F++   L  H+r+H
  Itr_sc000006.1_g00027.1 181 HECSICGAEFTSGQALGGHMRRH 203
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-9109132No hitNo description
PfamPF139121.9E-13109134IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408110137IPR007087Zinc finger, C2H2
SMARTSM003550.06110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-9176203No hitNo description
Gene3DG3DSA:3.30.160.609.7E-4179203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741181208IPR007087Zinc finger, C2H2
SMARTSM003550.01181203IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-12181204IPR007087Zinc finger, C2H2
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMKFDDHMVS AIKKRRTKRP RQPSPVALRM ATSSSSSTVQ CIGRDDHFSG AGASSSPSSI  60
SENNREISVD LEEDMANCLI LLAQGRHDQE SPAPAPAPSL VAGAANKEVY ECKTCNRVFP  120
SFQALGGHRA SHKKPKASSP SAIPSPENQE SYYEDVTTLS LQIPGRVLPP SPILSNKNKM  180
HECSICGAEF TSGQALGGHM RRHRPLPPNA AATTTSSGGG GREDSSKSRN LMSFDLNLPA  240
APAEEERRET SFPFASKERV IVFSTSTLVN CHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217KKRRTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187350.11e-158PREDICTED: zinc finger protein ZAT5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-35C2H2 family protein