PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000005.1_g00037.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 521aa    MW: 56889.5 Da    PI: 6.5296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000005.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-1682126147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r rWT+eE+ ++++a k++G   W++I +++g ++t+ q++s+ qk+
  Itr_sc000005.1_g00037.1  82 RERWTEEEHNKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 126
                              78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-1676130IPR009057Homeodomain-like
PROSITE profilePS5129421.92277131IPR017930Myb domain
TIGRFAMsTIGR015575.9E-1780129IPR006447Myb domain, plants
SMARTSM007172.3E-1381129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-982122IPR009057Homeodomain-like
PfamPF002491.1E-1382125IPR001005SANT/Myb domain
CDDcd001672.18E-1084127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MRKSSLGLCV NRDFSSVLAV ARAAAGVGEL MVSTGMTVQD QNGGTSIPTD MGVSAARRVQ  60
QLTPADEHAP KARKPYTITK QRERWTEEEH NKFLEALKLY GRAWRRIEEH VGTKTAVQIR  120
SHAQKFFSKV VRESNGTDVN SVKPIEIPPP RPKRKPMHPY PRKLVIAGGA PAQEKLTSSV  180
PSNVSLVEKE NQEDQSPTSV LSALGSEGEG TTDSTLNGSP PPVSSALGDS SSGFVPSEQC  240
NLLQEENRSS LPVQPSANPS PDEQPFARLE LFPQENGFVN DCSTEASSTY SLKLFGKTVL  300
VTDSHRPSSP TSGTSKTLPT EANDEVATQS LPWTFAPMKI LLGSPECTTS NLPLGASTSL  360
YYPPTQIEYS NTVESILAPS LPWALPYATA SFPRVQVHDP IPVKARPVFD NKETEDKENR  420
NEPSSTASDS GSVNILEKLN GKNSETEIES EEQQSSEKIG NELSTAFRPT ETTTNNFKLR  480
TSSGKRMKGF LPYKRCLAER ATHSSTITGE EREEQRTRLC L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8499670.0AB849967.1 Ipomoea nil DR03 mRNA for Myb family transcription factor, complete cds, cultivar: Violet.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182743.10.0PREDICTED: protein REVEILLE 2-like
TrEMBLX5I0Q80.0X5I0Q8_IPONI; Myb family transcription factor
STRINGXP_009613640.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31852447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.14e-51MYB_related family protein