PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000002.1_g00029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23582.2 Da PI: 6.8499 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.9e-39 | 10 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rrkC++dCvlapyfp++qpk+f+n+h+lFG+sn+lk+lk++++++ + dam+s+++e+++r r Pv+G+v+ i l++ Itr_sc000002.1_g00029.1 10 ACAACKHQRRKCSSDCVLAPYFPSTQPKTFQNAHRLFGVSNILKTLKHIDDDDkKADAMKSIIFESDMRHRFPVHGCVKYIYYLSH 95 7************************************************7666499****************************** PP DUF260 86 qleqlkaelallkeel 101 +++q+++el ++++l Itr_sc000002.1_g00029.1 96 RVSQAEEELRCVRAQL 111 *********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.066 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-37 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTVKGGTSQA CAACKHQRRK CSSDCVLAPY FPSTQPKTFQ NAHRLFGVSN ILKTLKHIDD 60 DDKKADAMKS IIFESDMRHR FPVHGCVKYI YYLSHRVSQA EEELRCVRAQ LDRCREQLLK 120 SMNSNDDNSN YNCDTGYAWT DESKALSSFD PISSAEYNDL SIFPHENFPD YYGLIPGEQP 180 STKEASNSSS VSSSQTDLRN AAAGLSLTRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-24 | 6 | 113 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-24 | 6 | 113 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185512.1 | 1e-109 | PREDICTED: LOB domain-containing protein 27-like isoform X2 | ||||
Swissprot | Q9STS6 | 1e-40 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1S3X592 | 2e-54 | A0A1S3X592_TOBAC; LOB domain-containing protein 2-like | ||||
STRING | XP_009612871.1 | 2e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-38 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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