PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000001.1_g00084.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 187aa    MW: 20873.5 Da    PI: 7.0433
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000001.1_g00084.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.81.1e-133081556
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                             ++ +r+q+NRe+ArrsR RK++ ++eL   +++L++eN +  +++++     
  Itr_sc000001.1_g00084.1 30 RKRKRMQSNRESARRSRMRKQQHLDELMAQAAALKKENAQILSKISSTARDF 81
                             5789**************************************9998876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-182690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2432891IPR004827Basic-leucine zipper domain
PfamPF001706.1E-113079IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.49E-113081No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-113076No hitNo description
CDDcd147026.82E-193182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAYSSGNSSG STQLTNSGSE EDLQVLMNER KRKRMQSNRE SARRSRMRKQ QHLDELMAQA  60
AALKKENAQI LSKISSTARD FMNVEAENSV LRAQMMELSQ RLQSLNDILN RMNSSQAAAG  120
AGAAGHGFFD VYEDIPTGHH QTLMNTSNSP WMFMMNQQPI MASADHFFQF WCSQLDLEVC  180
GGALLGC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153306.11e-103PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L59e-43BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A328D8122e-57A0A328D812_9ASTE; Uncharacterized protein
STRINGXP_009618859.17e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-42basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]