PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_8187.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 270aa MW: 30113 Da PI: 7.7259

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_8187.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LHerFv+av++LGG++kAtPk++l+lm +kgLtl+h+kSHLQkYRl MLOC_8187.2 25 KQRLRWTPDLHERFVHAVARLGGPDKATPKAVLRLMAMKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-32	22	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.531	22	82	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.0E-24	25	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.2E-16	25	79	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-8	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	122	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MFEGMEGMSY GGGGAGDGAA SRDPKQRLRW TPDLHERFVH AVARLGGPDK ATPKAVLRLM 60 AMKGLTLYHL KSHLQKYRLG KHTKKSTDLE LDNSGEFTTQ DINFQVGAPL VVPAGRDAAR 120 EMPLEDTLRY QIQVQRELCE QLEVQKKLQM RIEAQGRYLK EILEKAQENI SFDANGSAGL 180 ENARSQLTNF NLALPGLSDN GTHVYKESSE HSVKAVTDDN LHNNNLDFQL YRVRSQEAKN 240 AKCTPKTEDL LLLDLNIKGG YDLSSRGMQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_8187.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371512	0.0	AK371512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2136B23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164352.1	1e-171	myb family transcription factor PHL11-like
TrEMBL	A0A287J7Z1	0.0	A0A287J7Z1_HORVV; Uncharacterized protein
STRING	MLOC_8187.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-58	G2-like family protein