PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_81102.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 327aa    MW: 37992.8 Da    PI: 9.103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_81102.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-1724109697
                   ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   t+ d ++++++v+p +f+  ++ k   s t+ le ++g++++v +  + +++++vl++GW+ Fv+an++  +D+++F++ g+++f   v vf
  MLOC_81102.1  24 THMDRHSRHIMVIPESFVYYFEWK--LSGTIELEAPNGNVYDVGI--TERRNKTVLRSGWEAFVDANHIVKRDSLMFRYRGNRRF--EVVVF 109
                   56789999**********444544..6679***************..999999**************************998888..55555 PP
2B334.34.2e-112553251487
                   T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   g l++  ++++++  k  +s+ l++++  + ++W  +l    + ++  +t+GW +F+k+n+L+  D+++F+l+++
  MLOC_81102.1 255 GSLTFATQYCDTYLRK--GSRSLVFQTkGKRQQWHGEL--HDNNRALRITGGWTSFAKDNNLRNWDICLFELMKN 325
                   4578888899888434..566799998455599*****..888889*************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-2016114IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-818112IPR003340B3 DNA binding domain
PROSITE profilePS5086312.7619112IPR003340B3 DNA binding domain
CDDcd100171.04E-1720110No hitNo description
Gene3DG3DSA:2.40.330.103.1E-1920114IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-1524108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14238326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-13239325IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-9242327No hitNo description
PROSITE profilePS5086310.898242327IPR003340B3 DNA binding domain
SMARTSM010190.29244327IPR003340B3 DNA binding domain
PfamPF023622.0E-8255325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSNFCECCNR YWTHLHGKVK CFVTHMDRHS RHIMVIPESF VYYFEWKLSG TIELEAPNGN  60
VYDVGITERR NKTVLRSGWE AFVDANHIVK RDSLMFRYRG NRRFEVVVFN SSGCEKVVSC  120
TARIQSNIND QERSTNSTDI STGFSYGNNH LLARRSDDCQ TGRSGYCRKR ARKDAISSRS  180
EDLSENSLCE HESSESEDIE RIRIRPEQDD THPYIMTRYA RLTQLQKKKV LKKVEVIASD  240
LHIYVAVITR ASVLGSLTFA TQYCDTYLRK GSRSLVFQTK GKRQQWHGEL HDNNRALRIT  300
GGWTSFAKDN NLRNWDICLF ELMKNNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_81102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158256.11e-163B3 domain-containing protein Os03g0619600-like
TrEMBLM0ZBQ60.0M0ZBQ6_HORVV; Uncharacterized protein
STRINGMLOC_81102.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-14B3 family protein