PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80133.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 846aa    MW: 96595.5 Da    PI: 7.0643
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80133.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.11.4e-1385168190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   k+Y++YA + GFs  + ks++  ++g + +  + Cs++g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+l+
  MLOC_80133.4  85 KYYKQYAVDSGFSAITLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDTKLDHNHPLN 168
                   69***********999988887.7888***************99998.....89999**************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-1185168IPR004330FAR1 DNA binding domain
PfamPF105514.8E-24272365IPR018289MULE transposase domain
PROSITE profilePS509669.137559595IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-5570597IPR006564Zinc finger, PMZ-type
PfamPF044343.2E-6572591IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MEAPIEADGK SSEQLPGNGS LPKIAEKSQD LGGNPGMELP PLHQGKEVIL VEDNDSGQED  60
GGSAKVDENA PRIGLRFKTY DDALKYYKQY AVDSGFSAIT LKSSYLKSGV CRRLVLGCSR  120
SGRGRANACY LSRETAKINC PARISLKLRQ DRWLHIDDTK LDHNHPLNQS SDSPMSCYKK  180
LTDAKSVENA SRLKGRRNVP IADKEQGKFT EIGRLKFGEG DDEQIQKFFG SMQNKNPNFF  240
YLVDLDKQGR LRNLFWSDAR SQAAHEYFGH DVVYFDTSYL TEKYDLPLVF FTGMNNHGHP  300
VLFGTGLLSD LSAESYTWLF RAFLACMKGC YPDAIITEHY NAILDAVREV FSQVKHRLCL  360
YRIMRDVAEN LKVHAEFKTI KRALKKVTYG SLKDSEFEAD WKKIIEEHGL AGNECLSSLH  420
EHRRLWAPAY LKDKFWAGMS VSQRGESVAS YYDGFVYPKT SLKQFFSKYE MILENKYKKE  480
LQADEESSHR TPLTVTKFYM EEQLAKAYTI NMFRKFQEEL KATMYCDGMP SKVDGQFVTF  540
EVKECSYMED GKETESRIYE VYFCKEGLIV ECECGFFQFT GILCRHALSV FKLHDMFEIP  600
SRYVLDRWKR DYKKLHALAH YPNEMLLGDT VERHDYLSTQ CRQVLNLGFI SESRYLVALK  660
LLREAERTLL YDGQPARDRQ PRLLSFEADA PENGQGLFSS QFPEGAKNSL STNAKSPCLP  720
AKKVVETNPD AVLRSNKEQV DFLRSSFVPT ETNMIQGTPS ASHLESPDMG VQGSIHLMEG  780
ISPNLTFGPH FGMDVSHQHE LPNQPRMMPN NFMQVQADPH VFGNQWAYNP TMQDNPMLRT  840
PTRRAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80133.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157633.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A453JBJ90.0A0A453JBJ9_AEGTS; Uncharacterized protein
STRINGMLOC_80133.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-121FAR1-related sequence 6