PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_79967.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 313aa    MW: 33082.1 Da    PI: 7.6919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_79967.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05526223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ C ++F ++  L  H+r+H
  MLOC_79967.1  5 TCKLCFRRFASPRALAGHMRSH 26
                  6********************9 PP
2zf-C2H211.70.00081238259223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   +Cp+C ++F++   L  H r+H
  MLOC_79967.1 238 ECPYCYRVFPSGQALGGHKRSH 259
                   5******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.162431IPR007087Zinc finger, C2H2
SMARTSM003550.049426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.25E-7526No hitNo description
PfamPF138944.0E-4526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.25E-7166193No hitNo description
PROSITE profilePS501579.078171193IPR007087Zinc finger, C2H2
PfamPF139122.3E-9171193IPR007087Zinc finger, C2H2
SMARTSM003550.28171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
PfamPF139122.5E-12237259IPR007087Zinc finger, C2H2
SMARTSM003552.1237259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAKNTCKLCF RRFASPRALA GHMRSHSVRN LAAKQQISSA SSASTSFTAA ADDDISFKKP  60
LPIYALRENP KRSLRVTDVA FSDRESEAES TPPRAKRAHP TAAGGETEPL SSVSDAATPE  120
EDVALSLMML SRDSWPSSVG RGDGDYSDDG SDGGYTLPAP DPTPVEKRTR FQCGACKKVF  180
RSYQALGGHR ASHVRGGRGG CCAPPVAPPP PTPQPLPPLP LMERDGDEDM DGKGSPRECP  240
YCYRVFPSGQ ALGGHKRSHV CSAAAAAAQA HAAAAPPDPI KAFGMIDLNI ALPCEDVELS  300
AVSDPRFSSN PAP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_79967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186301.11e-162zinc finger protein ZAT1-like
TrEMBLM0Z9X30.0M0Z9X3_HORVV; Uncharacterized protein
STRINGMLOC_79967.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-30C2H2-like zinc finger protein