PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7981.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 145aa    MW: 15929 Da    PI: 8.5087
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7981.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-14650347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
      MLOC_7981.2  6 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 50
                     8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.954155IPR017930Myb domain
SMARTSM007173.9E-9353IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-16356IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-17454IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.3E-10546IPR009057Homeodomain-like
PfamPF002494.2E-11649IPR001005SANT/Myb domain
CDDcd001672.69E-10651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTTGVPWSEE EHRLFLVGLE KLGKGDWRGI SRSYVTTRTP TQVASHAQKF FLRQSSMGKK  60
KRRSSLFDMV PICENGIRVS EPLTNNSEDA STSLPRYKSP DMASIDLNST QEDDMAGVPL  120
LSASGASPRA PFPAVLMEQP PHGHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7981.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591960.0AK359196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091L03.
GenBankAK3705260.0AK370526.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112B05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184061.11e-88transcription factor SRM1-like
TrEMBLF2D5N61e-100F2D5N6_HORVV; Predicted protein
TrEMBLM0Z9R91e-100M0Z9R9_HORVV; Uncharacterized protein
STRINGMLOC_7981.11e-101(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-38MYB_related family protein