PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_79356.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SRS | ||||||||
Protein Properties | Length: 184aa MW: 19280 Da PI: 9.8823 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 115.8 | 6.2e-36 | 96 | 162 | 2 | 68 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaa 68 ++gt+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpaa+rrer++q+ +as+++ ++ + MLOC_79356.2 96 GAGTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPAARRRERHHQQPQASAEQFKRPR 162 5789***********************************************8888777665544332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-32 | 99 | 162 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.5E-28 | 101 | 143 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGFPLGGGG HHSRGARDDD GSHPPGINPS ASSSSAAAFL YATTPSRGGF QLWQGQPQHE 60 QQQHPFYGGP SSSIIRFADD PAASGSSSRG GGRGSGAGTI SCQDCGNQAK KDCPHMRCRT 120 CCKSRGFDCA THVKSTWVPA ARRRERHHQQ PQASAEQFKR PREGGQPSST TPTTTSSGGS 180 ISSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_79356.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241285 | 4e-50 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. | |||
GenBank | AP005314 | 4e-50 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. | |||
GenBank | AP005567 | 4e-50 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. | |||
GenBank | AP014965 | 4e-50 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 4e-50 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156435.1 | 2e-66 | protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A287WLR8 | 1e-125 | A0A287WLR8_HORVV; Uncharacterized protein | ||||
TrEMBL | M0Z916 | 1e-124 | M0Z916_HORVV; Uncharacterized protein | ||||
STRING | MLOC_79356.1 | 1e-125 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-27 | SHI-related sequence 5 |