PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_78461.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 341aa    MW: 35820.8 Da    PI: 8.4833
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_78461.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.71.3e-19116174259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    Dg +WrKYGqK++++s  +rsYYrCt++   gC++k++v+ s+++p   +i Y g+H+++
  MLOC_78461.1 116 TDGKSWRKYGQKQINDS--TRSYYRCTHKpdqGCQAKRHVQESESNPAEYTIDYYGQHTCR 174
                   7999**********876..7********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-21103176IPR003657WRKY domain
SuperFamilySSF1182901.26E-19109176IPR003657WRKY domain
PROSITE profilePS5081117.637110176IPR003657WRKY domain
SMARTSM007741.4E-24115175IPR003657WRKY domain
PfamPF031061.2E-18117174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASSGGGRSP ATAVLDDLVD VRDRVGMLQT VLHESSPRAT AEAGELVEGM MAKLSSSMSV  60
LGTGDGVIAS SSGAGRESGG RRERTGAAAS GPHRRSSPRR RMKSPLIKTV TTTMLTDGKS  120
WRKYGQKQIN DSTRSYYRCT HKPDQGCQAK RHVQESESNP AEYTIDYYGQ HTCRDPSTFP  180
SLIAQGAAAA APPPDFANLI SFAPINGSNR GFTASTSTSA FAHHLMKEAA DHHSMLFSRF  240
SNHSSSPPAQ EGVSSGSPSP ACHGKFMQYA GGQFINVTGL STSPLTVGSA PAEYWPVVGV  300
AGVDMDAGAA MDSFASPPSS PGFLSGSLEG SFGNNVCHWR I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20109174269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_78461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181740.10.0WRKY transcription factor 6-like
TrEMBLA0A287WY920.0A0A287WY92_HORVV; Uncharacterized protein
STRINGMLOC_78461.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-18WRKY DNA-binding protein 70