PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_78196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 20092.1 Da PI: 12.029 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 91 | 112 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++ L rH t H MLOC_78196.1 91 CRVCGRRFRARDALLRHFDTiH 112 9****************88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.032 | 89 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.63E-5 | 90 | 114 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 91 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSRPLYNLRR RLLPSRSHRL STTSSTPATP VAVLWDLAAS RPPSKLPLYD SAVRLHLAAS 60 SFGRLRFSAA FLHPCHRLPA PDPSADATNL CRVCGRRFRA RDALLRHFDT IHTREHAKRL 120 ERIESSRGDR RVRLAASLSL KLSKYSKAAR ELTAGVNPGS PADELRRARV HAELSRYPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_78196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164485.1 | 1e-111 | uncharacterized protein LOC109749961 | ||||
TrEMBL | A0A1D5USV8 | 1e-111 | A0A1D5USV8_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_78196.1 | 1e-121 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12234 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 7e-15 | C2H2 family protein |