PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77763.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | AP2 | ||||||||
Protein Properties | Length: 178aa MW: 20077.7 Da PI: 8.6906 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 28 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g MLOC_77763.4 28 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 78 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.33E-27 | 28 | 88 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 28 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-17 | 28 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.277 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-31 | 29 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-16 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 68 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKQMKGLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD 60 NEVEAARAYD KAAIKCNGRE AVTNFEPSTY DAELLNEAAA EGADVDLNLS ISQPTSQSPK 120 RDKSTLGLQL HHGSYEGSEL KRPKASTNDF CLSLKDCTPV QFHCWILYGY LIHYVTNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77763.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX402084 | 1e-148 | JX402084.1 Phyllostachys edulis transcription factor AP2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170161.1 | 1e-99 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | B8AXC3 | 4e-87 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A287EN03 | 1e-130 | A0A287EN03_HORVV; Uncharacterized protein | ||||
STRING | EMT19064 | 1e-102 | (Aegilops tauschii) | ||||
STRING | MLOC_77763.7 | 1e-102 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-57 | related to AP2.7 |