PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_7757.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 268aa MW: 29759 Da PI: 6.9424

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_7757.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.5	1.7e-42	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppG+rF Pt+eelv +yL++ ++g++ ++e+vi+ +d+++++Pw+Lp+ +++++ + w++F+ r++++a+g r++r+t sgyWka g+ v+ MLOC_7757.1 4 LPPGYRFYPTEEELVRFYLRHMLDGSRrDDIERVIPVADVCSLDPWQLPEvhrgACAGHGEPWFYFCARQEREARGGRPSRTTPSGYWKAAGTPGLVY 101 79********************9996677788**********95456544557889******************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++g+ vg+kkt+vfy+grap g kt+W m+eyr+ MLOC_7757.1 102 SAGGHPVGTKKTMVFYRGRAPAGAKTKWKMNEYRA 136 *******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-48	2	168	IPR003441	NAC domain
PROSITE profile	PS51005	47.143	4	169	IPR003441	NAC domain
Pfam	PF02365	1.4E-22	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAELPPGYRF YPTEEELVRF YLRHMLDGSR RDDIERVIPV ADVCSLDPWQ LPEVHRGACA 60 GHGEPWFYFC ARQEREARGG RPSRTTPSGY WKAAGTPGLV YSAGGHPVGT KKTMVFYRGR 120 APAGAKTKWK MNEYRAFDDD GTHADAAAPA PNTTLEVRSE FSLCRLYTRS GSLRQFDRRP 180 CTAVAGSGAE DPASSSAAAA SANEVFEMGR GQKRKRHAAN DHAPSNGDAY RSVVQQQQQQ 240 EVVGGADEQL TADDMTDWAE LLHWIEYK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-30	4	172	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-30	4	172	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-30	4	172	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-30	4	172	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	7e-30	4	172	20	171	NAC domain-containing protein 19
3swm_B	7e-30	4	172	20	171	NAC domain-containing protein 19
3swm_C	7e-30	4	172	20	171	NAC domain-containing protein 19
3swm_D	7e-30	4	172	20	171	NAC domain-containing protein 19
3swp_A	7e-30	4	172	20	171	NAC domain-containing protein 19
3swp_B	7e-30	4	172	20	171	NAC domain-containing protein 19
3swp_C	7e-30	4	172	20	171	NAC domain-containing protein 19
3swp_D	7e-30	4	172	20	171	NAC domain-containing protein 19
4dul_A	6e-30	4	172	17	168	NAC domain-containing protein 19
4dul_B	6e-30	4	172	17	168	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_7757.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359954	0.0	AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158910.1	1e-142	LOW QUALITY PROTEIN: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-65	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	F2D7U2	0.0	F2D7U2_HORVV; Predicted protein
STRING	MLOC_7757.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-67	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]