PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77405.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 390aa    MW: 42645.5 Da    PI: 4.5849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77405.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19115165155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa+a+++a+++++g
  MLOC_77405.1 115 CGFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAEVAAQAYDEAARAMYG 165
                   79*****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.44E-30115175No hitNo description
PfamPF008472.1E-12115165IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-20116174IPR016177DNA-binding domain
SMARTSM003803.0E-35116179IPR001471AP2/ERF domain
PROSITE profilePS5103222.049116173IPR001471AP2/ERF domain
PRINTSPR003671.4E-9117128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-30117174IPR001471AP2/ERF domain
PRINTSPR003671.4E-9139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTEMGTSRLT LKKPAEITVC VSAGSSDLLC NEYALLAQQN PKGDALPVAS ILRKKRPRRS  60
RDGPNSVSET IKRWKEVNQQ LEHDPQGAKR ARKPPAKGSK KGCMQGKGGP ENTQCGFRGV  120
RQRTWGKWVA EIREPNRVSR LWLGTFPTAE VAAQAYDEAA RAMYGPLART NFPVQDAQAA  180
PAVAVPVATE GVVRGSSASC ESTTTSNHSD VASSSHNKQL QIQAPEISSR SDLLESTQSV  240
EYSQQQSVPD AVSSIAMSTS EEDVYEPLEP ISNLPDGEAD CFDIEELLKL IEADPVEVDP  300
VTVGSWNEFQ DAGANARGSW NEFQCGVSWN ANAGMEMGQQ EPLYLDGLDQ GMLEGMLHSD  360
YPFPVWISED RPMHNPAFHD AEMSEFFEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-14117175362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77405.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2490600.0AK249060.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf16f14, mRNA sequence.
GenBankAK3602990.0AK360299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1114O16.
GenBankHQ6473510.0HQ647351.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP protein gene, complete cds.
GenBankHQ6473520.0HQ647352.1 Hordeum vulgare subsp. vulgare cultivar Steptoe AP2/EREBP protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156297.10.0dehydration-responsive element-binding protein 2B-like isoform X1
SwissprotQ5W6R44e-82DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLM0Z5B10.0M0Z5B1_HORVV; Uncharacterized protein
STRINGMLOC_77405.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]