PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_77380.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 336aa    MW: 38160.8 Da    PI: 10.2778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_77380.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16244330597
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   + +++vl+   l++p ++ ee+ g+  +  +++  ++ +++W+v +  + +++ y  ++GWk+Fvk+n Lk gD+++F+ +++++ ++ v+++
  MLOC_77380.1 244 MGRANVLSGFSLTIPVRYGEEYFGD--G--KVICFQLGNKKWNVSF--STSRKDYRVETGWKKFVKDNCLKLGDICLFEPQSNQRSTMEVHII 330
                   55678999999***********666..2..588888999*******..999999*************************99998888999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.179175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-8173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-7173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-16237332IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-17239331IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-17239330No hitNo description
SMARTSM010195.1E-11240333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534240333IPR003340B3 DNA binding domain
PfamPF023623.3E-15240330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
FVHRFKGEIP GEIELQTKNK CRYKIKVVKN QEEQLVLAAG WGRFIEKFSL QTRESIILFR  60
YNGKSQFSVI ILDQLGREKA SSVVNPLPPR ALKRHTNCAE TVSQHPSDGH PLPVERLVQS  120
TDAAANILRR PTQIAETADC SPPLKIMPST AQFDVHQQQQ AMLMQPPLNH SSSSSHDHVQ  180
NALGFVRVVR RKYGLTSSQK KQRKDGYITT HRTKLTSAQE QQVKDMVQTI RSRIGDIIIF  240
VALMGRANVL SGFSLTIPVR YGEEYFGDGK VICFQLGNKK WNVSFSTSRK DYRVETGWKK  300
FVKDNCLKLG DICLFEPQSN QRSTMEVHII HVNDGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_77380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-114HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165134.11e-89putative B3 domain-containing protein Os03g0621600
TrEMBLA0A287V3720.0A0A287V372_HORVV; Uncharacterized protein
STRINGMLOC_77380.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein