PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7694.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 444aa    MW: 47483.9 Da    PI: 6.5068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7694.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.61.2e-107344024373
         GRAS   4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   L++c e v++gd ++a a La  + +   + ++g+ + R+a++f+ AL +rl+  +++ + al +s+++      +   ++ f+++ P+lkf+h+ta
  MLOC_7694.2  34 RLVNCSEDVQAGDYAAAAAKLADARMMlatSVSTGTGIGRIASHFAAALTQRLFPASPHSCFALDASPER------AGELYRQFYDAAPYLKFAHFTA 125
                  699*******************9999887677888********************888877777777766......5667999*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea++g++rvH++D+ i+qG+QWpaL+qaL+ Rp+gpps+RiTgvgs     + +  e+g rLa++A++++vpf+f+ +  ++l++l++++++v
  MLOC_7694.2 126 NQAILEAFDGCDRVHVVDLAIMQGVQWPALIQALSIRPGGPPSVRITGVGS-----APAADEVGLRLAELARAVNVPFSFQRVPDDSLDTLQPWMFQV 218
                  ***************************************************.....899***********************9888************ PP

         GRAS 197 kpgEalaVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287
                   pgEa+aVn++ qlhrll    + s+sl+s++d vL  +  ++P+v++vveqeadhn+++++ rf++a+ yy +++ds+ea+++        + +   
  MLOC_7694.2 219 LPGEAVAVNSICQLHRLLvdpdAASTSLPSPIDVVLGWIAAMRPRVFTVVEQEADHNKSRLAPRFSNAMFYYGSVLDSMEASMSFSRggaIGNGSGAD 316
                  ******************666666778888*************************************************9998777654544556677 PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++l+rei n+v+ceg++r+erhe l+ W +rl + G+  vpl+ +aa+qa  l+r +++dg+rv+e  g+l l W++rpL+++S+W
  MLOC_7694.2 317 AYLQREIFNIVCCEGSARTERHEPLAYWCARLWRTGLAHVPLGPTAANQAAKLVRVYSGDGFRVQEIGGCLSLAWHGRPLFTASVW 402
                  88************************************************************************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.9785383IPR005202Transcription factor GRAS
PfamPF035144.2E-10534402IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGHFAFGWQG MEPAPAAARR EQEAEKAAVY LIWRLVNCSE DVQAGDYAAA AAKLADARMM  60
LATSVSTGTG IGRIASHFAA ALTQRLFPAS PHSCFALDAS PERAGELYRQ FYDAAPYLKF  120
AHFTANQAIL EAFDGCDRVH VVDLAIMQGV QWPALIQALS IRPGGPPSVR ITGVGSAPAA  180
DEVGLRLAEL ARAVNVPFSF QRVPDDSLDT LQPWMFQVLP GEAVAVNSIC QLHRLLVDPD  240
AASTSLPSPI DVVLGWIAAM RPRVFTVVEQ EADHNKSRLA PRFSNAMFYY GSVLDSMEAS  300
MSFSRGGAIG NGSGADAYLQ REIFNIVCCE GSARTERHEP LAYWCARLWR TGLAHVPLGP  360
TAANQAAKLV RVYSGDGFRV QEIGGCLSLA WHGRPLFTAS VWSAMPAADG AGTSESEQHG  420
DKHKLKMGIG ESSGGRLPGA AGAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-48154032378Protein SCARECROW
5b3h_D2e-48154032378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7694.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161412.10.0DELLA protein SLR1-like
TrEMBLA0A287GPJ70.0A0A287GPJ7_HORVV; Uncharacterized protein
STRINGMLOC_7694.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-89RGA-like 2