PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7694.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 444aa MW: 47483.9 Da PI: 6.5068 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.6 | 1.2e-107 | 34 | 402 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 L++c e v++gd ++a a La + + + ++g+ + R+a++f+ AL +rl+ +++ + al +s+++ + ++ f+++ P+lkf+h+ta MLOC_7694.2 34 RLVNCSEDVQAGDYAAAAAKLADARMMlatSVSTGTGIGRIASHFAAALTQRLFPASPHSCFALDASPER------AGELYRQFYDAAPYLKFAHFTA 125 699*******************9999887677888********************888877777777766......5667999*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIlea++g++rvH++D+ i+qG+QWpaL+qaL+ Rp+gpps+RiTgvgs + + e+g rLa++A++++vpf+f+ + ++l++l++++++v MLOC_7694.2 126 NQAILEAFDGCDRVHVVDLAIMQGVQWPALIQALSIRPGGPPSVRITGVGS-----APAADEVGLRLAELARAVNVPFSFQRVPDDSLDTLQPWMFQV 218 ***************************************************.....899***********************9888************ PP GRAS 197 kpgEalaVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287 pgEa+aVn++ qlhrll + s+sl+s++d vL + ++P+v++vveqeadhn+++++ rf++a+ yy +++ds+ea+++ + + MLOC_7694.2 219 LPGEAVAVNSICQLHRLLvdpdAASTSLPSPIDVVLGWIAAMRPRVFTVVEQEADHNKSRLAPRFSNAMFYYGSVLDSMEASMSFSRggaIGNGSGAD 316 ******************666666778888*************************************************9998777654544556677 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++l+rei n+v+ceg++r+erhe l+ W +rl + G+ vpl+ +aa+qa l+r +++dg+rv+e g+l l W++rpL+++S+W MLOC_7694.2 317 AYLQREIFNIVCCEGSARTERHEPLAYWCARLWRTGLAHVPLGPTAANQAAKLVRVYSGDGFRVQEIGGCLSLAWHGRPLFTASVW 402 88************************************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.978 | 5 | 383 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-105 | 34 | 402 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGHFAFGWQG MEPAPAAARR EQEAEKAAVY LIWRLVNCSE DVQAGDYAAA AAKLADARMM 60 LATSVSTGTG IGRIASHFAA ALTQRLFPAS PHSCFALDAS PERAGELYRQ FYDAAPYLKF 120 AHFTANQAIL EAFDGCDRVH VVDLAIMQGV QWPALIQALS IRPGGPPSVR ITGVGSAPAA 180 DEVGLRLAEL ARAVNVPFSF QRVPDDSLDT LQPWMFQVLP GEAVAVNSIC QLHRLLVDPD 240 AASTSLPSPI DVVLGWIAAM RPRVFTVVEQ EADHNKSRLA PRFSNAMFYY GSVLDSMEAS 300 MSFSRGGAIG NGSGADAYLQ REIFNIVCCE GSARTERHEP LAYWCARLWR TGLAHVPLGP 360 TAANQAAKLV RVYSGDGFRV QEIGGCLSLA WHGRPLFTAS VWSAMPAADG AGTSESEQHG 420 DKHKLKMGIG ESSGGRLPGA AGAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-48 | 15 | 403 | 2 | 378 | Protein SCARECROW |
5b3h_D | 2e-48 | 15 | 403 | 2 | 378 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7694.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161412.1 | 0.0 | DELLA protein SLR1-like | ||||
TrEMBL | A0A287GPJ7 | 0.0 | A0A287GPJ7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_7694.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-89 | RGA-like 2 |