PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 483aa MW: 51063.9 Da PI: 6.3179 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.2 | 1.6e-107 | 73 | 441 | 4 | 373 |
GRAS 4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 L++c e v++gd ++a a La + + + ++g+ + R+a++f+ AL +rl+ +++ + al +s+++ + ++ f+++ P+lkf+h+ta MLOC_7694.1 73 RLVNCSEDVQAGDYAAAAAKLADARMMlatSVSTGTGIGRIASHFAAALTQRLFPASPHSCFALDASPER------AGELYRQFYDAAPYLKFAHFTA 164 699*******************9999887677888********************888877777777766......5667999*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaIlea++g++rvH++D+ i+qG+QWpaL+qaL+ Rp+gpps+RiTgvgs + + e+g rLa++A++++vpf+f+ + ++l++l++++++v MLOC_7694.1 165 NQAILEAFDGCDRVHVVDLAIMQGVQWPALIQALSIRPGGPPSVRITGVGS-----APAADEVGLRLAELARAVNVPFSFQRVPDDSLDTLQPWMFQV 257 ***************************************************.....899***********************9888************ PP GRAS 197 kpgEalaVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287 pgEa+aVn++ qlhrll + s+sl+s++d vL + ++P+v++vveqeadhn+++++ rf++a+ yy +++ds+ea+++ + + MLOC_7694.1 258 LPGEAVAVNSICQLHRLLvdpdAASTSLPSPIDVVLGWIAAMRPRVFTVVEQEADHNKSRLAPRFSNAMFYYGSVLDSMEASMSFSRggaIGNGSGAD 355 ******************666666778888*************************************************9998777654544556677 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++l+rei n+v+ceg++r+erhe l+ W +rl + G+ vpl+ +aa+qa l+r +++dg+rv+e g+l l W++rpL+++S+W MLOC_7694.1 356 AYLQREIFNIVCCEGSARTERHEPLAYWCARLWRTGLAHVPLGPTAANQAAKLVRVYSGDGFRVQEIGGCLSLAWHGRPLFTASVW 441 88************************************************************************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 53.256 | 44 | 422 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-105 | 73 | 441 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MGHFAFGWQG MEPAPAASLS AAAAATNGAD AAYCVHPATY APAALATVPP AVAEAAARRE 60 QEAEKAAVYL IWRLVNCSED VQAGDYAAAA AKLADARMML ATSVSTGTGI GRIASHFAAA 120 LTQRLFPASP HSCFALDASP ERAGELYRQF YDAAPYLKFA HFTANQAILE AFDGCDRVHV 180 VDLAIMQGVQ WPALIQALSI RPGGPPSVRI TGVGSAPAAD EVGLRLAELA RAVNVPFSFQ 240 RVPDDSLDTL QPWMFQVLPG EAVAVNSICQ LHRLLVDPDA ASTSLPSPID VVLGWIAAMR 300 PRVFTVVEQE ADHNKSRLAP RFSNAMFYYG SVLDSMEASM SFSRGGAIGN GSGADAYLQR 360 EIFNIVCCEG SARTERHEPL AYWCARLWRT GLAHVPLGPT AANQAAKLVR VYSGDGFRVQ 420 EIGGCLSLAW HGRPLFTASV WSAMPAADGA GTSESEQHGD KHKLKMGIGE SSGGRLPGAA 480 GAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-48 | 76 | 442 | 24 | 378 | Protein SCARECROW |
5b3h_D | 5e-48 | 76 | 442 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161412.1 | 0.0 | DELLA protein SLR1-like | ||||
TrEMBL | A0A287GPJ7 | 0.0 | A0A287GPJ7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_7694.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-89 | RGA-like 2 |