PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_7694.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 483aa    MW: 51063.9 Da    PI: 6.3179
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_7694.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.21.6e-107734414373
         GRAS   4 lLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   L++c e v++gd ++a a La  + +   + ++g+ + R+a++f+ AL +rl+  +++ + al +s+++      +   ++ f+++ P+lkf+h+ta
  MLOC_7694.1  73 RLVNCSEDVQAGDYAAAAAKLADARMMlatSVSTGTGIGRIASHFAAALTQRLFPASPHSCFALDASPER------AGELYRQFYDAAPYLKFAHFTA 164
                  699*******************9999887677888********************888877777777766......5667999*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea++g++rvH++D+ i+qG+QWpaL+qaL+ Rp+gpps+RiTgvgs     + +  e+g rLa++A++++vpf+f+ +  ++l++l++++++v
  MLOC_7694.1 165 NQAILEAFDGCDRVHVVDLAIMQGVQWPALIQALSIRPGGPPSVRITGVGS-----APAADEVGLRLAELARAVNVPFSFQRVPDDSLDTLQPWMFQV 257
                  ***************************************************.....899***********************9888************ PP

         GRAS 197 kpgEalaVnlvlqlhrll....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvEr 287
                   pgEa+aVn++ qlhrll    + s+sl+s++d vL  +  ++P+v++vveqeadhn+++++ rf++a+ yy +++ds+ea+++        + +   
  MLOC_7694.1 258 LPGEAVAVNSICQLHRLLvdpdAASTSLPSPIDVVLGWIAAMRPRVFTVVEQEADHNKSRLAPRFSNAMFYYGSVLDSMEASMSFSRggaIGNGSGAD 355
                  ******************666666778888*************************************************9998777654544556677 PP

         GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++l+rei n+v+ceg++r+erhe l+ W +rl + G+  vpl+ +aa+qa  l+r +++dg+rv+e  g+l l W++rpL+++S+W
  MLOC_7694.1 356 AYLQREIFNIVCCEGSARTERHEPLAYWCARLWRTGLAHVPLGPTAANQAAKLVRVYSGDGFRVQEIGGCLSLAWHGRPLFTASVW 441
                  88************************************************************************************ PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.25644422IPR005202Transcription factor GRAS
PfamPF035145.6E-10573441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGHFAFGWQG MEPAPAASLS AAAAATNGAD AAYCVHPATY APAALATVPP AVAEAAARRE  60
QEAEKAAVYL IWRLVNCSED VQAGDYAAAA AKLADARMML ATSVSTGTGI GRIASHFAAA  120
LTQRLFPASP HSCFALDASP ERAGELYRQF YDAAPYLKFA HFTANQAILE AFDGCDRVHV  180
VDLAIMQGVQ WPALIQALSI RPGGPPSVRI TGVGSAPAAD EVGLRLAELA RAVNVPFSFQ  240
RVPDDSLDTL QPWMFQVLPG EAVAVNSICQ LHRLLVDPDA ASTSLPSPID VVLGWIAAMR  300
PRVFTVVEQE ADHNKSRLAP RFSNAMFYYG SVLDSMEASM SFSRGGAIGN GSGADAYLQR  360
EIFNIVCCEG SARTERHEPL AYWCARLWRT GLAHVPLGPT AANQAAKLVR VYSGDGFRVQ  420
EIGGCLSLAW HGRPLFTASV WSAMPAADGA GTSESEQHGD KHKLKMGIGE SSGGRLPGAA  480
GAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-487644224378Protein SCARECROW
5b3h_D5e-487644224378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_7694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161412.10.0DELLA protein SLR1-like
TrEMBLA0A287GPJ70.0A0A287GPJ7_HORVV; Uncharacterized protein
STRINGMLOC_7694.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-89RGA-like 2