PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76689.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 329aa    MW: 36112.7 Da    PI: 5.0299
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76689.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.1e-16188247155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++g+++A+++d  +   g  ++ k+++lg+++t+++Aa+a++ a++k++g
  MLOC_76689.8 188 SCYHGVTRHRWSGKYEAHLWDsTCRvEGrrRKgKQVYLGSYDTEQKAARAYDVAALKYWG 247
                   79*******************777786666336**********99*************97 PP
2AP232.52.2e-10290329143
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAa 43 
                   s y+GV+++ k+grW A+I       g ++ ++lg+f t+eeAa
  MLOC_76689.8 290 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAA 329
                   57****************88832...2.5**********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-17188257IPR016177DNA-binding domain
PfamPF008476.0E-13188247IPR001471AP2/ERF domain
SMARTSM003805.3E-25189261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-16189255IPR001471AP2/ERF domain
PROSITE profilePS5103218.913189255IPR001471AP2/ERF domain
CDDcd000181.01E-18190257No hitNo description
SuperFamilySSF541712.42E-8290329IPR016177DNA-binding domain
PfamPF008472.0E-5290329IPR001471AP2/ERF domain
SMARTSM003800.003291329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-8291329IPR001471AP2/ERF domain
PROSITE profilePS5103212.589291329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKSGEEVSQG QQMDGFVEEK AAGESRDGQK IERSPSINLN SLPAMAPAAA EIGVLHGAAE  60
SEANDASTQK GDESSGTDQK KVPKNEEVDE GEIQGRADMK SDSVDPLNSE NHAGEKDALV  120
TVPENEGRAD GGDNYKGVQV LSVVKKDEPE EIVDSINPVT VAEYREEKGA TSSTSAITAV  180
RAPGSRSSCY HGVTRHRWSG KYEAHLWDST CRVEGRRRKG KQVYLGSYDT EQKAARAYDV  240
AALKYWGLNT KLNFSISEYE KELADIQDMS PEECVTYLRR RSSCFSRGAS IYRGVTRRQK  300
DGRWQARIGL IAGTRDIYLG TFKTEEEAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214221GRRRKGKQ
2278299RRRSSCFSRGASIYRGVTRRQK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76689.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529820.0AK252982.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153211.10.0AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_020174447.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ32e-67AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A287UQQ80.0A0A287UQQ8_HORVV; Uncharacterized protein
STRINGMLOC_76689.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.17e-70AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]