PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_7649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29390 Da PI: 7.3456 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.7 | 8.5e-13 | 17 | 101 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++s+ +lp kfa+ +g +++ +++l+ + W+v + ++ + +++l++G k+Fv+a++L+ g +vF++dg ++ l+vkvf+ MLOC_7649.1 17 SFSSQ--RLPDKFAKLLDGREPR--EVKLREAGSgrgSLWDVVVVFDADG-HMYLERGRKQFVRAHDLRLGHLLVFSYDG--DAVLTVKVFD 101 44444..79*****888888555..67777633335599*****888876.567999********************988..4556999997 PP | |||||||
2 | B3 | 38.8 | 1.7e-12 | 158 | 230 | 14 | 86 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 + l +p +f e+hg+ k++ +++l+ +g W v+l+++k+ g+ +++ GW +F +n+Lk+gD++ F+ + MLOC_7649.1 158 QYLNVPLEFHEAHGYAKRS--KVVLR-MRGMDWAVNLKHNKRAGGktrSTFRYGWHQFLVDNRLKVGDICFFRALR 230 56889********999876..45555.599*******9966655556699**********************9543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.758 | 6 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.31E-12 | 7 | 101 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-15 | 9 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.8E-8 | 9 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-10 | 18 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-23 | 137 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.013 | 143 | 254 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 145 | 254 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-13 | 153 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.0E-10 | 159 | 230 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.98E-9 | 160 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDVLEVFEFF EIILENSFSS QRLPDKFAKL LDGREPREVK LREAGSGRGS LWDVVVVFDA 60 DGHMYLERGR KQFVRAHDLR LGHLLVFSYD GDAVLTVKVF DLSMCRRHYQ DDTSSGSSSD 120 SSSDSTSSRS AEMDVDDAPT SQFAVTLSVC HFLGKQQQYL NVPLEFHEAH GYAKRSKVVL 180 RMRGMDWAVN LKHNKRAGGK TRSTFRYGWH QFLVDNRLKV GDICFFRALR GNNAGRGGDD 240 GDDHELKVQV RKLDGSFVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_7649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374007 | 0.0 | AK374007.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3050O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148431.1 | 1e-127 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 1e-75 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | F2ECY2 | 1e-161 | F2ECY2_HORVV; Predicted protein | ||||
STRING | MLOC_7649.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 1e-14 | B3 family protein |
Publications ? help Back to Top | |||
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