PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_76450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 242aa MW: 26685.8 Da PI: 8.2225 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H MLOC_76450.1 57 YTCTFCRREFRSAQALGGHMNVH 79 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.59E-6 | 54 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 57 | 84 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-5 | 57 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAANYYWGMW GAATTNTTAA TYPAPASAAE PSWEEQAFAR DAAGHLGVGC VWPPRSYTCT 60 FCRREFRSAQ ALGGHMNVHR RDRARLRQCA SPPDHQVQPQ PTSPYDHHEH LQPGMQYRAA 120 VRPKSPQDQQ ASMIGSSTSS PSYISSIIKE NRNKVFIAIP AEEASESGDE EERRKRRRVD 180 QPPAVALPFF VRRSPASCER ERMQGADDGD TKVPKAAPSP SPLLLAVGLQ EVDLELRLGT 240 SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 4e-13 | 52 | 79 | 2 | 29 | superman protein |
2l1o_A | 4e-13 | 52 | 79 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 177 | RKRRR |
2 | 174 | 178 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_76450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973083 | 1e-50 | EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192921.1 | 1e-154 | zinc finger protein 8-like | ||||
TrEMBL | M0Z3L6 | 1e-179 | M0Z3L6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_76450.1 | 1e-180 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 6e-26 | zinc-finger protein 10 |