PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_76165.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 685aa    MW: 73998.1 Da    PI: 6.8217
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_76165.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.18.2e-28215268155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYR+
  MLOC_76165.1 215 RPRVVWSVELHRKFVTAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRV 268
                   59*******************.********************************7 PP
2Response_reg74.73.6e-25261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga 
  MLOC_76165.1  26 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAIIALRMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGAC 120
                   799********************.***************99999********************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel +
  MLOC_76165.1 121 DYLLKPVRIEELKN 134
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1861685IPR017053Response regulator B-type, plant
SuperFamilySSF521724.84E-3423148IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4023165No hitNo description
SMARTSM004483.2E-2924136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.47825140IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.8E-2326134IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.83E-2527139No hitNo description
PROSITE profilePS5129411.6212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-29213273IPR009057Homeodomain-like
SuperFamilySSF466898.06E-19213272IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-25216268IPR006447Myb domain, plants
PfamPF002493.2E-6217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MMRRDERRGA AAAATCRDQF PVGMRVLAVD DDPVCLKVLE TLLRRCQYHV TATNQAIIAL  60
RMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VMKGITHGAC  120
DYLLKPVRIE ELKNIWQHVV RRKFSTRDSL NADMYEECNK PPSSDSDYLY DQVKCGSSVQ  180
SGRPNKKRKE YHSEEEDEDG DSSGQDNDDP SAPKRPRVVW SVELHRKFVT AVNHLGIDKA  240
VPKRILELMN VEKLTRENVA SHLQKYRVYL RRLSAVASQQ AGIVAALGGR DPFLRMDAFE  300
GLQGYQAFTS PAALSTFGAH GLLNSPRNNQ TAVVIQGVAT SRSIPTGSSS CTTNPLIGDA  360
ANYHLSPPGN RHGNLAQGLV TSLGQTQLEQ KWMNEGSGDL SSILSGSSRA NGMPRMLPSV  420
TSSPLLPSDL VECTQAQVAI QPPVTAPSAS LEQLEGAIGA SSGTLVSRVS QQNALSPSGF  480
SANGLLVHGS LNNYGASFSS NGATRLGDAF SASFRQTNDF TVPRGMKVGS SSFGGAIHLS  540
PDTTEQKYLS FGSSDSLLDP KLVWSSSQLP SNIGAHHFMS QRSNNCSIGS SHGARMFGQT  600
SAGASTAVPQ AKFDILFSGD ASMARNASES SARRSESSAQ RLQSELSSST CSFDGLLNSM  660
IKVEKDDVAF SDDLGCDFYS FGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25211274164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00072SELEXTransfer from AT4G31920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_76165.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758490.0AK375849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170131.10.0two-component response regulator ORR23-like
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLM0Z3280.0M0Z328_HORVV; Two-component response regulator
STRINGMLOC_76165.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12