PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75601.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 254aa    MW: 26685.1 Da    PI: 6.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75601.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1883133155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  MLOC_75601.1  83 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAVAIKG 133
                   57*****887.**********843...6*********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-2983143No hitNo description
PfamPF008471.1E-1283132IPR001471AP2/ERF domain
PROSITE profilePS5103223.9684141IPR001471AP2/ERF domain
SMARTSM003801.7E-3884147IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2284142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-3384142IPR001471AP2/ERF domain
PRINTSPR003675.5E-118596IPR001471AP2/ERF domain
PRINTSPR003675.5E-11107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MESDTIHAPA TSSSSSSHSS GSTVINGVQD VSAKHLKRKR QTATSPAPGT GSQGTSEAAD  60
GARGEESSSC AAAADERTAG RHPSYRGVRR RSWGKWVSEI REPRKKSRIW LGTFPTAEMA  120
ARAHDVAAVA IKGRRAHLNF PHLAHALPRP ASTSPADIQA AAALAAAQCE SSSSVAETTE  180
TSTTSTEKEN STSAASSGEA GSGEENALFD LPDLLLDLRD GLWCSPTWAS AADDYDGGEA  240
AMHEPLLWVE QCWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19821421273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75601.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-94AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050061e-94AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149581e-94AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452321e-94AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194839.11e-111ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A287E3501e-178A0A287E350_HORVV; Uncharacterized protein
STRINGMLOC_75601.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]