PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75524.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 242aa    MW: 27041.9 Da    PI: 9.5349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75524.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.3e-50611921129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat+ g+Wkatg+dk+++ 
  MLOC_75524.4  61 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQEccRIGTgPQNDWYLFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYP 156
                   69****************************.9***************963444443456*************************************9 PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   + +  ++g++ktLvfy+grap+g+k+dW+mheyrle
  MLOC_75524.4 157 AaGYGHIGMRKTLVFYQGRAPHGHKSDWIMHEYRLE 192
                   867778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5251197IPR003441NAC domain
PROSITE profilePS5100550.09661229IPR003441NAC domain
PfamPF023651.7E-2662191IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPDVLAPLP PISLSLPSQV VSLYPITGNN FIPVDPTPSS PLHYCTTRSI MSISVNGQSV  60
VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQECC RIGTGPQNDW  120
YLFSHKDKKY PTGTRTNRAT TVGFWKATGR DKAIYPAAGY GHIGMRKTLV FYQGRAPHGH  180
KSDWIMHEYR LEDATTPGNN PANRAIGNAP YYPGSSSSVR TLLLRLFSML HGVYSLRPKR  240
NV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-436119115140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75524.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678010.0AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149596.11e-107NAC domain-containing protein 43-like
SwissprotQ9M2743e-83NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A287VJ451e-161A0A287VJ45_HORVV; Uncharacterized protein
STRINGMLOC_75524.11e-150(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.11e-84NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]