PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75524.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 30299.2 Da PI: 9.0384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.5 | 1.3e-49 | 61 | 192 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ ++ + +++wy Fs++dkky+tg+r+nrat+ g+Wkatg+dk+++ MLOC_75524.3 61 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQEccRIGTgPQNDWYLFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYP 156 69****************************.9***************963444443456*************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + + ++g++ktLvfy+grap+g+k+dW+mheyrle MLOC_75524.3 157 AaGYGHIGMRKTLVFYQGRAPHGHKSDWIMHEYRLE 192 867778****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-54 | 51 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.715 | 61 | 242 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-26 | 62 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-54 | 230 | 242 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAPDVLAPLP PISLSLPSQV VSLYPITGNN FIPVDPTPSS PLHYCTTRSI MSISVNGQSV 60 VPPGFRFHPT EEELLTYYLA KKVASQRIDL DVIPDVDLNK LEPWDIQECC RIGTGPQNDW 120 YLFSHKDKKY PTGTRTNRAT TVGFWKATGR DKAIYPAAGY GHIGMRKTLV FYQGRAPHGH 180 KSDWIMHEYR LEDATTPGNN PANRAIGNAP YYPGSSSSIR SVVGDQSSAQ EDGWVICRVF 240 KKKNIVVQQQ ADQNGGGRRT ASNNLVAAGA IELSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 61 | 244 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75524.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367801 | 0.0 | AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149596.1 | 1e-136 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 3e-90 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A287VJ45 | 0.0 | A0A287VJ45_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75524.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-92 | NAC family protein |