PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_75297.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 21126.8 Da PI: 10.4561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.4 | 2.7e-44 | 24 | 161 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevl 93 lp+GfrF+Ptdeelv +yLk+k++g+ ++ +i++vd+ vePwdLp + +k+++ ew+fF++rd+ + +++r+ r+t++gyWkatgkd+ + MLOC_75297.2 24 LPVGFRFRPTDEELVRHYLKAKIAGRAHPDLLAIPDVDLAAVEPWDLPaRsVIKSDDPEWFFFARRDRPKYpgKSSRSCRSTAAGYWKATGKDRLIR 120 79*************************999899***************5347777888********9855435678999*****************9 PP NAM 94 sk.......kgelvglkktLvfykgrapkgektdWvmheyr 127 kg+l+g+kktLvf++grap+g +t W+mhey+ MLOC_75297.2 121 GPgpggcrgKGALIGVKKTLVFHRGRAPRGARTPWIMHEYT 161 9999999888889***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-47 | 15 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.548 | 24 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 25 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MTTTAAAAGA ESSSSSASPS EAALPVGFRF RPTDEELVRH YLKAKIAGRA HPDLLAIPDV 60 DLAAVEPWDL PARSVIKSDD PEWFFFARRD RPKYPGKSSR SCRSTAAGYW KATGKDRLIR 120 GPGPGGCRGK GALIGVKKTL VFHRGRAPRG ARTPWIMHEY TAVSADNPVH HSGSQSASAS 180 ASASAAGPQN VTCLLAFQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-35 | 20 | 160 | 11 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_75297.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171646.1 | 1e-98 | uncharacterized protein LOC109757228 | ||||
Swissprot | F4JN35 | 2e-55 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | M0Z146 | 1e-142 | M0Z146_HORVV; Uncharacterized protein | ||||
STRING | MLOC_75297.2 | 1e-143 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 1e-54 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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