PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75166.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 390aa    MW: 41869.7 Da    PI: 5.4682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75166.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35481392102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++iswse+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
  MLOC_75166.4  48 FLNKTYQLVDDPAVDDVISWSEDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIH 135
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  MLOC_75166.4 136 RRKV 139
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3741132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5944137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3545137IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3248137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204871IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-2099111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVSSGQICAV VVGGGVMGEQ AAPVSCGETP AQAEVGTGVG QRSLPTPFLN KTYQLVDDPA  60
VDDVISWSED GSAFVVWRPA EFARDLLPKY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN  120
DCFRRGEKRL LCDIHRRKVT PTVAATAAVT VAAAAAIPVA LPVTKRQGSP VLSGDEQVLS  180
SSSSPEPPFL NQYAPSYSGS GGVASGDLGE ENLRLRRENS RLTRELGQMK KLCNNIFVLM  240
SKYTDGQQVD AANATSAATD ADAGHCSGES AETTPLPPPP VLELLPSCPS APTAADLGAE  300
DEEEKMSARL FGVCIGRKRM RHDGEDQSSR GAAEVKPEPM DAQQPSLDGH TTEVQTWPIY  360
RPRPAYHPLR ASNGSNCYSG SDDHNGSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-264814010112Heat shock factor protein 1
5hdn_A2e-264814010112Heat shock factor protein 1
5hdn_B2e-264814010112Heat shock factor protein 1
5hdn_C2e-264814010112Heat shock factor protein 1
5hdn_D2e-264814010112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_75166.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730360.0AK373036.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3018N01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197754.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-149HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLM0Z0T00.0M0Z0T0_HORVV; Uncharacterized protein
STRINGMLOC_75166.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-58heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]