PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74813.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 440aa    MW: 47873.6 Da    PI: 4.6605
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74813.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix1071.3e-33178263187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k+ev+aLi++r e++e+ ++  +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a
  MLOC_74813.4 178 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 263
                   8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.631171235IPR017877Myb-like domain
SMARTSM007170.003175237IPR001005SANT/Myb domain
CDDcd122033.16E-25177242No hitNo description
Gene3DG3DSA:1.10.10.607.5E-4177234IPR009057Homeodomain-like
PfamPF138377.4E-22178264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MATATTILPD PRPLAMAPAY PAAGLPDLSL SSNSESESDD GSDEGEDQAG GGGRSNESMM  60
ALFEGMIKQI TEKQDATQRL FLETLEKWEA DRTAREEAWR RQELARISRE REQHARERAA  120
AAARDAALIA FLQRVGGNSV LPTPMPAPHP DAPAASLQLV VAASEEGGRR ESGAGMSRWP  180
KEEVHALIQL RMEKDEHCQD MGAKGPLWED ISAGMRRIGY NRSSKRCKEK WENINKYFKK  240
VKESNKRRPD DSKTCPYFHQ LDAIYRKKQF AVANAGGGCS GTASGNTLAA VNAAASEKEN  300
HPWRELEGKV SNDFGRRYRV GGGSSDAPPG DAEMAAASTV LDAVGTSKKS EDNMQSMEPN  360
MQSQQKELTA TDETDSDDIE TNYTDDGDDD DDGEDGNEDD KMKYTIEFQK HKESGSSSAP  420
APATVVTSSA PTSSTFLAVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74813.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725500.0AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20.
GenBankAK3754940.0AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.10.0trihelix transcription factor GTL1-like
RefseqXP_020184217.10.0trihelix transcription factor GTL1-like
SwissprotQ391178e-66TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0YZH60.0M0YZH6_HORVV; Uncharacterized protein
STRINGMLOC_74813.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.26e-54Trihelix family protein