PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_74813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 519aa MW: 57055.9 Da PI: 5.0649 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.6 | 2.1e-20 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++lk+p Weevs+k++e g+ rs+k+Ckek+en+ k+y+++keg+ +r ++ +++++f++lea MLOC_74813.1 1 MDAAFRNAALKAPVWEEVSRKLAELGYCRSAKKCKEKFENVDKYYRRTKEGRAGR--QDGKNYRFFEELEA 69 67899************************************************97..66678******985 PP | |||||||
2 | trihelix | 106.7 | 1.6e-33 | 258 | 343 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e++e+ ++ +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a MLOC_74813.1 258 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 343 8********************************************************************97.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.09E-16 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 3.8E-15 | 4 | 70 | No hit | No description |
PROSITE profile | PS50090 | 4.588 | 15 | 42 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.631 | 251 | 315 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.003 | 255 | 317 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-4 | 257 | 314 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 1.80E-24 | 257 | 322 | No hit | No description |
Pfam | PF13837 | 9.6E-22 | 258 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MDAAFRNAAL KAPVWEEVSR KLAELGYCRS AKKCKEKFEN VDKYYRRTKE GRAGRQDGKN 60 YRFFEELEAL HAAAPQHNHP MATATTILPD PRPLAMAPAY PAAGLPDLSL SSNSESESDD 120 GSDEGEDQAG GGGRSNESMM ALFEGMIKQI TEKQDATQRL FLETLEKWEA DRTAREEAWR 180 RQELARISRE REQHARERAA AAARDAALIA FLQRVGGNSV LPTPMPAPHP DAPAASLQLV 240 VAASEEGGRR ESGAGMSRWP KEEVHALIQL RMEKDEHCQD MGAKGPLWED ISAGMRRIGY 300 NRSSKRCKEK WENINKYFKK VKESNKRRPD DSKTCPYFHQ LDAIYRKKQF AVANAGGGCS 360 GTASGNTLAA VNAAASEKEN HPWRELEGKV SNDFGRRYRV GGGSSDAPPG DAEMAAASTV 420 LDAVGTSKSE DNMQSMEPNM QSQQKELTAT DETDSDDIET NYTDDGDDDD DGEDGNEDDK 480 MKYTIEFQKH KESGSSSAPA PATVVTSSAP TSSTFLAVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_74813.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376129 | 0.0 | AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184216.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
Refseq | XP_020184217.1 | 0.0 | trihelix transcription factor GTL1-like | ||||
Swissprot | Q39117 | 7e-99 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A287UDK8 | 0.0 | A0A287UDK8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_74813.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 8e-53 | Trihelix family protein |