PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74469.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family SRS
Protein Properties Length: 293aa    MW: 29765 Da    PI: 8.4244
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74469.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.22.6e-65642224154
        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskk.qsalsstkls 92 
                    ++sCqdCGn+akkdC+h+RCRtCC+srgf+C+thvkstWvpa+krrerqqqlaa+ + aaa++        + a+kr+rel  +  +  +++t ++
  MLOC_74469.1  64 AGTSCQDCGNNAKKDCTHQRCRTCCRSRGFNCSTHVKSTWVPASKRRERQQQLAALFRGAAANNsaaaaaaVAVANKRPRELVRSLgRLPSATTAMV 160
                   4579****************************************************99999888777766545567788887444303334445556 PP

        DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                    a++++     ++P+e+s eavfrcvr++ vd+ ++e+aYqtavsigGh+fkGiL+d+G++e
  MLOC_74469.1 161 DATTSSGEGDGRFPPELSLEAVFRCVRIGPVDEPDAEFAYQTAVSIGGHTFKGILRDHGPAE 222
                   666666777788***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-6265221IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-2567109IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-18172220IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
GGGGGIGFQL WHPHHQQAAA VPHTSQFFSS GVATGVVLGF SPHEGGGVGG VGLAGGGGPG  60
GGRAGTSCQD CGNNAKKDCT HQRCRTCCRS RGFNCSTHVK STWVPASKRR ERQQQLAALF  120
RGAAANNSAA AAAAVAVANK RPRELVRSLG RLPSATTAMV DATTSSGEGD GRFPPELSLE  180
AVFRCVRIGP VDEPDAEFAY QTAVSIGGHT FKGILRDHGP AEEAAGQLPP SSAEYHQLTG  240
AAREGSSPAG SSEAAGGHGA TVATSAAVLM DPYPTPIGAF AAGTQFFPHN PRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6783470.0AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192925.10.0protein SHI RELATED SEQUENCE 1-like
RefseqXP_020192926.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLJ7M3S80.0J7M3S8_HORVV; Putative short internodesfamily transcription factor
STRINGMLOC_74469.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.19e-56Lateral root primordium (LRP) protein-related