PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_73144.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 1129aa    MW: 125382 Da    PI: 6.3872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_73144.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22133234199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  MLOC_73144.4 133 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RDEKQQ 226
                   99******************************9999986.*************************************************..568888 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+++++r+
  MLOC_73144.4 227 LLLGIRRA 234
                   9****997 PP
2Auxin_resp114.97.4e-38259342183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  MLOC_73144.4 259 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 342
                   799********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-41122262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-39125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-18132224No hitNo description
SMARTSM010191.1E-21133235IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448133235IPR003340B3 DNA binding domain
PfamPF023623.5E-20133234IPR003340B3 DNA binding domain
PfamPF065077.0E-33259342IPR010525Auxin response factor
PfamPF023093.9E-89931081IPR033389AUX/IAA domain
PROSITE profilePS5174526.9479961080IPR000270PB1 domain
SuperFamilySSF542772.84E-610101075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MAQSPASSAV VGASAPSEGE RKAPAINGEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA  60
ASMQKDVEAH VPSYPNLPSK LICLLHSVTL QADPDTDEVY AQMTLQPVNT YAKEALQLSE  120
LALRQARPQM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP SLDFSLQPPC QELQARDIHD  180
NVWTFRHIFR GQPKRHLLTT GWSLFVSGKK LFAGDSVIFV RDEKQQLLLG IRRANRQPTN  240
ISSSVLSSDS MHIGVLAAAA HASANTSPFT IFYNPRASPT EFVIPFAKYQ KAMYSNQISL  300
GMRFRMMCET EELGTRRYMG TITGISDLDP VRWKNSQWRS LQVGWDESAA GERRNRVSIW  360
EIEPLAAPFF ICPQPFFGVK RPRQLDDESL EMENLFKRAM PWLGEEVCIK DPQTQSATMP  420
GLSLVQWMNM NRQQSSSLAS TSMQSEYLRS ASNPAMQNIG AADLARQLYM QNHILQQNSM  480
QFNPPKLHQQ MKPINDLSNA ALPLNQLGAI RNHQDQKQDQ QRQQQSSIQA IPLSQAQAQT  540
NIVQAQVILQ NQMQQQKQPP PSPTQNQHGA SGQHLLQSHQ LQDQNLQMQQ QQLLLHQQLQ  600
QQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ  660
NFLVEMQQQL SNSHSLAQQQ VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP SQKQVAPTYV  720
SEAAFPQISS TSVIPKTGNT MIVPGAAQSA LTEEIPSCST SPSTANGSHL AQPTIGRNEH  780
CKISTEKVPH STAQMSILTP IEAVSVTPVT TKELPKLNNS VKSSAISSKL PNVVSGLQNF  840
MNNALPTDNL ETASSATSLW PSQSDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS  900
ALFGMNSDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYRMQKDARQ EISTSMVSQS  960
FGQSDMAFNS IDSAINDGAL MNRNSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG  1020
ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE  1080
VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYDQNSGNP SIGPYDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631936345388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_73144.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0YUJ90.0M0YUJ9_HORVV; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19